|
| Status |
Public on Aug 15, 2010 |
| Title |
BY4741_ypd_r2 |
| Sample type |
mixed |
| |
|
| Channel 1 |
| Source name |
BY4741 YPD
|
| Organism |
Saccharomyces cerevisiae |
| Characteristics |
strain: BY4741
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Qiagen Yeast RNA extraction
|
| Label |
Cy3
|
| Label protocol |
Indirect total RNA labeling
|
| |
|
| Channel 2 |
| Source name |
BY4741 DNA
|
| Organism |
Saccharomyces cerevisiae |
| Characteristics |
strain: progenitor
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Qiagen Yeast RNA extraction
|
| Label |
Cy5
|
| Label protocol |
Indirect total RNA labeling
|
| |
|
| |
| Hybridization protocol |
Standard Agilent protocols for Agilent-015072 Yeast Oligo Microarray 4x44K G2519F
|
| Scan protocol |
Standard Agilent protocols for Agilent-015072 Yeast Oligo Microarray 4x44K G2519F with dye rank correlation normalization disabled
|
| Data processing |
Agilent Feature Extraction version 10.5.1.1 with dye rank correlation normalization disabled.
|
| |
|
| Submission date |
May 13, 2010 |
| Last update date |
Aug 11, 2010 |
| Contact name |
Joshua Z Levin |
| Organization name |
Broad Institute of MIT & Harvard
|
| Street address |
320 Charles Street
|
| City |
Cambridge |
| State/province |
MA |
| ZIP/Postal code |
02141 |
| Country |
USA |
| |
|
| Platform ID |
GPL9294 |
| Series (1) |
| GSE21739 |
Comprehensive comparative analysis of strand-specific RNA sequencing methods |
|
