|
Status |
Public on Jul 18, 2021 |
Title |
Lipoma-derived adipocytes familial replicate2 |
Sample type |
SRA |
|
|
Source name |
mature adipocytes
|
Organism |
Homo sapiens |
Characteristics |
replicate: replicate 2 sample type: Lipoma-derived adipocytes familial
|
Extracted molecule |
polyA RNA |
Extraction protocol |
Stromal Vascular Fraction (SVF) was isolated from lipomas using our published protocol. (Aune et al., 2013 PMID: 23568137) 10X genomics snRNA-seq library construction protocol
|
|
|
Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
Illumina HiSeq 4000 |
|
|
Data processing |
Cell Ranger v3.1.0 kallisto_version: 0.46.1 Genome_build: GRCh38-2020 Supplementary_files_format_and_content: filtered featured bc matrix Supplementary_files_format_and_content: abundance.tsv (kallisto)
|
|
|
Submission date |
Jul 11, 2021 |
Last update date |
Jul 18, 2021 |
Contact name |
Kosaku Shinoda |
E-mail(s) |
bonitoo@gmail.com
|
Phone |
7186781189
|
Organization name |
Albert Einstein College of Medicine
|
Lab |
Shinoda lab
|
Street address |
1301 Morris Park Ave
|
City |
Bronx |
State/province |
NY |
ZIP/Postal code |
10461 |
Country |
USA |
|
|
Platform ID |
GPL20301 |
Series (1) |
GSE179887 |
scRNA-seq of stromal vascular fraction (SVF) of lipoma and bulk RNA-seq of lipoma-derived adipocytes. |
|
Relations |
BioSample |
SAMN20166672 |
SRA |
SRX11407623 |