|
| Status |
Public on Jul 18, 2021 |
| Title |
Lipoma-derived adipocytes sporadic replicate2 |
| Sample type |
SRA |
| |
|
| Source name |
mature adipocytes
|
| Organism |
Homo sapiens |
| Characteristics |
replicate: replicate 2
sample type: Lipoma-derived adipocytes sporadic
|
| Extracted molecule |
polyA RNA |
| Extraction protocol |
Stromal Vascular Fraction (SVF) was isolated from lipomas using our published protocol. (Aune et al., 2013 PMID: 23568137)
10X genomics snRNA-seq library construction protocol
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 4000 |
| |
|
| Data processing |
Cell Ranger v3.1.0
kallisto_version: 0.46.1
Genome_build: GRCh38-2020
Supplementary_files_format_and_content: filtered featured bc matrix
Supplementary_files_format_and_content: abundance.tsv (kallisto)
|
| |
|
| Submission date |
Jul 11, 2021 |
| Last update date |
Jul 18, 2021 |
| Contact name |
Kosaku Shinoda |
| E-mail(s) |
bonitoo@gmail.com
|
| Phone |
7186781189
|
| Organization name |
Albert Einstein College of Medicine
|
| Lab |
Shinoda lab
|
| Street address |
1301 Morris Park Ave
|
| City |
Bronx |
| State/province |
NY |
| ZIP/Postal code |
10461 |
| Country |
USA |
| |
|
| Platform ID |
GPL20301 |
| Series (1) |
| GSE179887 |
scRNA-seq of stromal vascular fraction (SVF) of lipoma and bulk RNA-seq of lipoma-derived adipocytes. |
|
| Relations |
| BioSample |
SAMN20166669 |
| SRA |
SRX11407626 |
