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Sample GSM548557 Query DataSets for GSM548557
Status Public on Jun 03, 2010
Title 2010_401, photosynthetic, 10 W/m2
Sample type RNA
 
Source name photosynthetic conditions (10W/m2 white light illumination, no oxygen); no salt stress
Organism Cereibacter sphaeroides 2.4.1
Characteristics strain: 2.4.1
Growth protocol Cells are grown at anoxic photosynthetic (10 W/m2 illumination) conditions without salt stress
Extracted molecule total RNA
Extraction protocol RNA isolated with bead beater + RNeasy kits
Label biotin
Label protocol according to Affymetrix protocol
 
Hybridization protocol according to Affymetrix protocol
Scan protocol according to Affymetrix protocol
Description Rhodobacter sphaeroides 2.4.1, Laramie
Data processing RMA processing for corresponding experimental series was used for data analysis and mentioned in the papers; MAS 5.0 values are depositied here for consistensy with other submissions
 
Submission date May 31, 2010
Last update date Jun 02, 2010
Contact name Mark Gomelsky
E-mail(s) gomelsky@uwyo.edu
Phone 307-766-3522
Organization name University of Wyoming
Department Molecular Biology
Lab Gomelsky
Street address
City Laramie
State/province WY
ZIP/Postal code 82071
Country USA
 
Platform ID GPL162
Series (1)
GSE8082 Rhodobacter sphaeroides salt stress response

Data table header descriptions
ID_REF
MAS5.0_VALUE relative signal of expression, MAS 5.0 in-chip scaling to 500
DETECTION CALL Present if p<0.04 Absent if p>0.06 Marginal if 0.04 < p < 0.06
VALUE RMA values of expression calculated in context of GSE8082 series

Data table
ID_REF MAS5.0_VALUE DETECTION CALL VALUE
1 15.8 A 33
2 16.1 A 41
3 7.8 A 30
4 17.5 A 33
5 89.1 A 35
6 5.4 A 24
7 17.3 A 27
8 4.3 A 24
9 13.8 A 30
10 15.7 A 44
11 8.2 A 23
12 17.7 A 26
13 70.9 A 27
14 17.4 A 28
15 9.4 A 25
16 64.9 A 26
17 8.2 A 28
18 48.8 A 39
19 104.0 A 31
20 25.2 A 25

Total number of rows: 5355

Table truncated, full table size 84 Kbytes.




Supplementary file Size Download File type/resource
GSM548557.CEL.gz 945.3 Kb (ftp)(http) CEL
Processed data included within Sample table

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