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Sample GSM548560 Query DataSets for GSM548560
Status Public on Jun 03, 2010
Title Mo A
Sample type RNA
 
Source name normal medium
Organism Cereibacter sphaeroides 2.4.1
Characteristics strain: 2.4.1
Growth protocol Photosynthetic conditions (10 W/m2, sealed flasks), normal medium (Mo)
Extracted molecule total RNA
Extraction protocol RNA isolated with bead beater + RNeasy kits
Label biotin
Label protocol according to Affymetrix protocol
 
Hybridization protocol according to Affymetrix protocol
Scan protocol according to Affymetrix protocol
Description Photosynthetic conditions (10 W/m2, sealed flasks), normal medium (Mo)
Data processing RMA processing for corresponding experimental series was used for data analysis and mentioned in the papers; MAS 5.0 values are depositied here for consistensy with other submissions
 
Submission date May 31, 2010
Last update date Jun 02, 2010
Contact name Mark Gomelsky
E-mail(s) gomelsky@uwyo.edu
Phone 307-766-3522
Organization name University of Wyoming
Department Molecular Biology
Lab Gomelsky
Street address
City Laramie
State/province WY
ZIP/Postal code 82071
Country USA
 
Platform ID GPL162
Series (1)
GSE22063 Transcriptional responses of Rhaodobacter sphaeroides to Tungsten

Data table header descriptions
ID_REF
MAS5 relative signal of expression, MAS 5.0 in-chip scaling to 500
DETECTION_CALL Present if p<0.04 Absent if p>0.06 Marginal if 0.04 < p < 0.06
VALUE RMA values of expression

Data table
ID_REF MAS5 DETECTION_CALL VALUE
1 4.1 A 30
2 28.5 A 35
3 0.6 A 23
4 5.2 A 21
5 6.0 A 22
6 1.6 A 21
7 0.9 A 23
8 6.3 A 23
9 1.1 A 24
10 0.9 A 22
11 1.2 A 20
12 0.5 A 20
13 1.6 A 19
14 0.2 A 20
15 1.4 A 20
16 0.0 A 20
17 2.7 A 21
18 1.5 A 23
19 0.1 A 20
20 2.2 A 21

Total number of rows: 5355

Table truncated, full table size 84 Kbytes.




Supplementary file Size Download File type/resource
GSM548560.CEL.gz 1.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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