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Sample GSM548564 Query DataSets for GSM548564
Status Public on Jun 03, 2010
Title WB
Sample type RNA
 
Source name medium with Tungsten instead of Molibdenium
Organism Cereibacter sphaeroides 2.4.1
Characteristics strain: 2.4.1
Growth protocol Photosynthetic conditions (10 W/m2, sealed flasks), medium with Tungsten instead of Molibdenium
Extracted molecule total RNA
Extraction protocol RNA isolated with bead beater + RNeasy kits
Label biotin
Label protocol according to Affymetrix protocol
 
Hybridization protocol according to Affymetrix protocol
Scan protocol according to Affymetrix protocol
Description Photosynthetic conditions (10 W/m2, sealed flasks), medium with Tungsten instead of Molibdenium
Data processing RMA processing for corresponding experimental series was used for data analysis and mentioned in the papers; MAS 5.0 values are depositied here for consistensy with other submissions
 
Submission date May 31, 2010
Last update date Jun 02, 2010
Contact name Mark Gomelsky
E-mail(s) gomelsky@uwyo.edu
Phone 307-766-3522
Organization name University of Wyoming
Department Molecular Biology
Lab Gomelsky
Street address
City Laramie
State/province WY
ZIP/Postal code 82071
Country USA
 
Platform ID GPL162
Series (1)
GSE22063 Transcriptional responses of Rhaodobacter sphaeroides to Tungsten

Data table header descriptions
ID_REF
MAS5 relative signal of expression, MAS 5.0 in-chip scaling to 500
DETECTION_CALL Present if p<0.04 Absent if p>0.06 Marginal if 0.04 < p < 0.06
VALUE RMA values of expression

Data table
ID_REF MAS5 DETECTION_CALL VALUE
1 5.0 A 30
2 10.4 A 37
3 0.4 A 23
4 0.4 A 21
5 3.6 A 22
6 0.7 A 21
7 0.7 A 23
8 5.2 A 23
9 5.9 A 25
10 4.3 A 23
11 0.5 A 20
12 0.6 A 21
13 0.5 A 20
14 0.3 A 20
15 0.2 A 20
16 0.0 A 20
17 6.2 A 20
18 2.0 A 24
19 1.1 A 21
20 0.2 A 21

Total number of rows: 5355

Table truncated, full table size 84 Kbytes.




Supplementary file Size Download File type/resource
GSM548564.CEL.gz 1.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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