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Sample GSM549178 Query DataSets for GSM549178
Status Public on Dec 01, 2010
Title INCTC_Bone_marrow_normal_CD34+
Sample type SAGE
Anchor NlaIII
Tag Count 61302
Tag Length 10
 
Source name Bone marrow CD34+ Hematopoietic Stem/Progenitor Cells
Organism Homo sapiens
Characteristics organ/tissue: bone marrow
tissue preparation: iliac crest aspiration
cell type: CD34+ HSPC
Biomaterial provider Hospital das Clínicas da Faculdade de Medicina de Ribeirão Preto - USP
Extracted molecule total RNA
Extraction protocol TRIzol® Reagent
 
Description Bone marrow iliac crest aspirates from healthy adult donors. CD34+ cells were isolated to >95% purity by MACS Indirect CD34 Progenitor Cell Isolation Kit (Miltenyi Biotec) following the manufacturer’s instructions.
Data processing N/A
 
Submission date Jun 02, 2010
Last update date Jun 04, 2010
Contact name Daniel Guariz Pinheiro
E-mail(s) dgpinheiro@usp.br
Phone +55-16-2101-9300
Organization name Faculdade de Medicina de Ribeirão Preto (Universidade de São Paulo)
Department Departamento de Genética
Lab Laboratório de Genética Molecular e Bioinformática
Street address Rua Tenente Catão Roxo, 2501
City Ribeirão Preto
State/province São Paulo
ZIP/Postal code 14051-140
Country Brazil
 
Platform ID GPL4
Series (1)
GSE22092 Gene expression profiling of the early-stage CD34+ differentiation process

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
TGTGTTGAGA 641 10456.43
TCAGATCTTT 471 7683.27
GCATAATAGG 441 7193.89
GTTCACATTA 439 7161.27
GAGGGAGTTT 436 7112.33
GGATTTGGCC 423 6900.26
GTGAAGGCAG 421 6867.64
CACAAACGGT 404 6590.32
GGGCTGGGGT 394 6427.20
TTGGTCCTCT 390 6361.95
ATAATTCTTT 374 6100.94
CTGGGTTAAT 359 5856.25
GAAAAATGGT 354 5774.69
AAGGTGGAGG 318 5187.43
ATGGCTGGTA 312 5089.56
AGGGCTTCCA 304 4959.06
GCAGCCATCC 298 4861.18
TAGGTTGTCT 295 4812.24
TGGTGTTGAG 289 4714.36
CCCATCGTCC 284 4632.80

Total number of rows: 24274

Table truncated, full table size 451 Kbytes.




Supplementary data files not provided

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