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Sample GSM558969 Query DataSets for GSM558969
Status Public on Jun 30, 2010
Title Control NGN-cre 29462602_532
Sample type RNA
 
Source name P9 testes
Organism Mus musculus
Characteristics tissue: juvenile testes
cre: Cre-negative
genotype: NGN-cre
age: P9
sex: Male
genotype: Control
Extracted molecule total RNA
Extraction protocol RNA was isolated from P9 testes using TRIzolTM reagent (Life Technologies), further purified with the RNeasy minelute cleanup kit (Qiagen 74204), and RNA quality was verified with a 2100 Bioanalyzer (Agilent Technologies).
Label Cy3
Label protocol Standard Nimble protocol: RNA was reverse transcribed and hybridized to an MM8_60mer_expr array (NimbleGen A4543-00-01)
 
Hybridization protocol standard Nimblegen protocol
Scan protocol standard Nimblegen protocol
Data processing RMA
 
Submission date Jun 22, 2010
Last update date Jun 22, 2010
Contact name Aaron Sarver
Organization name University of Minnesota
Department Masonic Cancer Center
Lab Biostatistics and Informatics
Street address 425 East River Road
City Minneapolis
State/province MN
ZIP/Postal code 55455
Country USA
 
Platform ID GPL10572
Series (2)
GSE22500 Conditional Dmrt1 knockout gene expression (phase 6)
GSE22510 Conditional Dmrt1 knockout gene expression

Data table header descriptions
ID_REF
VALUE RMA Normalized signal intensity

Data table
ID_REF VALUE
NM_001001130 1250.8648
NM_001001144 3903.3632
NM_001001152 270.3125
NM_001001160 1842.3983
NM_001001176 14189.1008
NM_001001177 1148.1345
NM_001001179 282.3125
NM_001001180 462.4375
NM_001001181 7249.1566
NM_001001182 3782.4375
NM_001001183 1491.5625
NM_001001184 4841.2672
NM_001001186 456.0625
NM_001001187 266.9662
NM_001001295 1693.0835
NM_001001297 658.0625
NM_001001303 43245.6875
NM_001001309 391.8838
NM_001001318 114.0733
NM_001001319 31.7491

Total number of rows: 25631

Table truncated, full table size 486 Kbytes.




Supplementary file Size Download File type/resource
GSM558969_29462602_532.pair.gz 1.2 Mb (ftp)(http) PAIR
Processed data included within Sample table

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