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Status |
Public on Jun 30, 2010 |
Title |
NimbleGen Mus musculus MM8 25.6K 60mer |
Technology type |
spotted oligonucleotide |
Distribution |
custom-commercial |
Organism |
Mus musculus |
Manufacturer |
Nimblegen |
Manufacture protocol |
Nimblegen
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Description |
Expression design for Mouse from mm8.
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Contributor(s) |
Sarver AL |
Submission date |
Jun 21, 2010 |
Last update date |
Jun 30, 2010 |
Contact name |
Aaron Sarver |
Organization name |
University of Minnesota
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Department |
Masonic Cancer Center
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Lab |
Biostatistics and Informatics
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Street address |
425 East River Road
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City |
Minneapolis |
State/province |
MN |
ZIP/Postal code |
55455 |
Country |
USA |
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Samples (27)
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GSM558969, GSM558970, GSM558971, GSM558972, GSM558973, GSM558974
GSM559007, GSM559008, GSM559009, GSM559010, GSM559011, GSM559012, GSM559013, GSM559014, GSM559015, GSM1314778, GSM1314779, GSM1314780, GSM1314781, GSM1314782, GSM1314783, GSM1314784, GSM1314785, GSM1314786, GSM1314787, GSM1314788, GSM1314789
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Series (5)
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GSE22500 |
Conditional Dmrt1 knockout gene expression (phase 6) |
GSE22507 |
Conditional Dmrt1 knockout gene expression (phase 7) |
GSE22508 |
Conditional Dmrt1 knockout gene expression (phase 8) |
GSE22510 |
Conditional Dmrt1 knockout gene expression |
GSE54419 |
Host transcripts detected in exosomes derived from M.tb infected murine RAW264.7 macrophages |
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Data table header descriptions |
ID |
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ACCESSION |
|
BUILD |
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FEAT_TYPE |
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CHROMOSOME |
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START |
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STOP |
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DESCRIPTION |
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GB_ACC |
GenBank accession |
Data table |
ID |
ACCESSION |
BUILD |
FEAT_TYPE |
CHROMOSOME |
START |
STOP |
DESCRIPTION |
GB_ACC |
NM_001001130 |
NM_001001130 |
MM8 |
transcript |
chr13 |
68246902 |
68254237 |
ExemplarFor 'NM_001001130'; gene_id '22746'; transcript_id 'NM_001001130'; gene_name 'Zfp85-rs1'; alt 'KRAB19 |
NM_001001130 |
NM_001001144 |
NM_001001144 |
MM8 |
transcript |
chr9 |
110178522 |
110230113 |
ExemplarFor 'NM_001001144'; gene_id '235623'; transcript_id 'NM_001001144'; gene_name 'Scap'; alt '9530044G19 |
NM_001001144 |
NM_001001152 |
NM_001001152 |
MM8 |
transcript |
chr13 |
67754014 |
67768165 |
ExemplarFor 'NM_001001152'; gene_id '238690'; transcript_id 'NM_001001152'; gene_name 'Zfp458'; alt 'BC062958 |
NM_001001152 |
NM_001001160 |
NM_001001160 |
MM8 |
transcript |
chr6 |
85436184 |
85468652 |
ExemplarFor 'NM_001001160'; gene_id '330369'; transcript_id 'NM_001001160'; gene_name 'Fbxo41'; alt '9630017H13 |
NM_001001160 |
NM_001001176 |
NM_001001176 |
MM8 |
transcript |
chrX |
102409592 |
102422352 |
ExemplarFor 'NM_001001176'; gene_id '407786'; transcript_id 'NM_001001176'; gene_name 'Taf9b'; alt 'BC066223 |
NM_001001176 |
NM_001001177 |
NM_001001177 |
MM8 |
transcript |
chr17 |
34024334 |
34068780 |
ExemplarFor 'NM_001001177'; gene_id '407788'; transcript_id 'NM_001001177'; gene_name 'BC051142'; alt '-'; cDNA sequence BC051142 |
NM_001001177 |
NM_001001179 |
NM_001001179 |
MM8 |
transcript |
chr6 |
128505900 |
128547225 |
ExemplarFor 'NM_001001179'; gene_id '232400'; transcript_id 'NM_001001179'; gene_name 'BC048546'; alt 'MGC58520'; cDNA sequence BC048546 |
NM_001001179 |
NM_001001180 |
NM_001001180 |
MM8 |
transcript |
chr7 |
140661008 |
140673452 |
ExemplarFor 'NM_001001180'; gene_id '407812'; transcript_id 'NM_001001180'; gene_name 'BC066028'; alt '-'; cDNA sequence BC066028 |
NM_001001180 |
NM_001001181 |
NM_001001181 |
MM8 |
transcript |
chr18 |
75131269 |
75135299 |
ExemplarFor 'NM_001001181'; gene_id '407819'; transcript_id 'NM_001001181'; gene_name 'BC031181'; alt '-'; cDNA sequence BC031181 |
NM_001001181 |
NM_001001182 |
NM_001001182 |
MM8 |
transcript |
chr2 |
59700201 |
59926579 |
ExemplarFor 'NM_001001182'; gene_id '407823'; transcript_id 'NM_001001182'; gene_name 'Baz2b'; alt '5830435C13Rik |
NM_001001182 |
NM_001001183 |
NM_001001183 |
MM8 |
transcript |
chr17 |
24785301 |
24808714 |
ExemplarFor 'NM_001001183'; gene_id '407831'; transcript_id 'NM_001001183'; gene_name 'BC054438'; alt '-'; cDNA sequence BC054438 |
NM_001001183 |
NM_001001184 |
NM_001001184 |
MM8 |
transcript |
chr8 |
48074410 |
48116017 |
ExemplarFor 'NM_001001184'; gene_id '408022'; transcript_id 'NM_001001184'; gene_name 'BC065112'; alt 'MGC86034'; cDNA sequence BC065112 |
NM_001001184 |
NM_001001186 |
NM_001001186 |
MM8 |
transcript |
chr13 |
67862680 |
67874863 |
ExemplarFor 'NM_001001186'; gene_id '408065'; transcript_id 'NM_001001186'; gene_name 'Zfp456'; alt 'BC065418 |
NM_001001186 |
NM_001001187 |
NM_001001187 |
MM8 |
transcript |
chr13 |
68171999 |
68182647 |
ExemplarFor 'NM_001001187'; gene_id '408068'; transcript_id 'NM_001001187'; gene_name '3830402I07Rik'; alt '-'; RIKEN cDNA 3830402I07 gene |
NM_001001187 |
NM_001001295 |
NM_001001295 |
MM8 |
transcript |
chr9 |
64105014 |
64139196 |
ExemplarFor 'NM_001001295,NM_172519'; gene_id '213550'; transcript_id 'NM_001001295'; gene_name 'AV340375'; alt '-'; expressed sequence AV340375 |
NM_001001295 |
NM_001001297 |
NM_001001297 |
MM8 |
transcript |
chr2 |
21123477 |
21132763 |
ExemplarFor 'NM_001001297,NM_177588'; gene_id '208967'; transcript_id 'NM_001001297'; gene_name 'Thnsl1'; alt 'AW413632'; threonine synthase-like 1 (bacterial) |
NM_001001297 |
NM_001001303 |
NM_001001303 |
MM8 |
transcript |
chr6 |
125127472 |
125131210 |
ExemplarFor 'NM_001001303,NM_001001978'; gene_id '407972'; transcript_id 'NM_001001303'; gene_name 'Gapdh'; alt 'Gapd |
NM_001001303 |
NM_001001309 |
NM_001001309 |
MM8 |
transcript |
chr2 |
12024512 |
12219773 |
ExemplarFor 'NM_001001309'; gene_id '241226'; transcript_id 'NM_001001309'; gene_name 'Itga8'; alt 'AI447669'; integrin alpha 8 |
NM_001001309 |
NM_001001318 |
NM_001001318 |
MM8 |
transcript |
chr7 |
106215198 |
106234722 |
ExemplarFor 'NM_001001318'; gene_id '209380'; transcript_id 'NM_001001318'; gene_name 'LOC209380'; alt '-'; similar to very large inducible GTPase 1 |
NM_001001318 |
NM_001001319 |
NM_001001319 |
MM8 |
transcript |
chr4 |
143325812 |
143336005 |
ExemplarFor 'NM_001001319'; gene_id '347710'; transcript_id 'NM_001001319'; gene_name 'Pramel5'; alt '-'; preferentially expressed antigen in melanoma like 5 |
NM_001001319 |
Total number of rows: 25631
Table truncated, full table size 4814 Kbytes.
Supplementary file |
Size |
Download |
File type/resource |
GPL10572_MM8_60mer.ngd.gz |
1.5 Mb |
(ftp)(http) |
NGD |
GPL10572_MM8_60mer_expr.ndf.gz |
4.4 Mb |
(ftp)(http) |
NDF |
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