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Sample GSM558972 Query DataSets for GSM558972
Status Public on Jun 30, 2010
Title Control NGN-cre 29481202_532
Sample type RNA
 
Source name P9 testes
Organism Mus musculus
Characteristics tissue: juvenile testes
cre: Cre-negative
genotype: NGN-cre
age: P9
sex: Male
genotype: Control
Extracted molecule total RNA
Extraction protocol RNA was isolated from P9 testes using TRIzolTM reagent (Life Technologies), further purified with the RNeasy minelute cleanup kit (Qiagen 74204), and RNA quality was verified with a 2100 Bioanalyzer (Agilent Technologies).
Label Cy3
Label protocol Standard Nimble protocol: RNA was reverse transcribed and hybridized to an MM8_60mer_expr array (NimbleGen A4543-00-01)
 
Hybridization protocol standard Nimblegen protocol
Scan protocol standard Nimblegen protocol
Data processing RMA
 
Submission date Jun 22, 2010
Last update date Jun 22, 2010
Contact name Aaron Sarver
Organization name University of Minnesota
Department Masonic Cancer Center
Lab Biostatistics and Informatics
Street address 425 East River Road
City Minneapolis
State/province MN
ZIP/Postal code 55455
Country USA
 
Platform ID GPL10572
Series (2)
GSE22500 Conditional Dmrt1 knockout gene expression (phase 6)
GSE22510 Conditional Dmrt1 knockout gene expression

Data table header descriptions
ID_REF
VALUE RMA Normalized signal intensity

Data table
ID_REF VALUE
NM_001001130 1266.8337
NM_001001144 3919.9436
NM_001001152 313.3125
NM_001001160 2257.5625
NM_001001176 13423.4683
NM_001001177 547.2986
NM_001001179 386.9375
NM_001001180 618.3691
NM_001001181 10118.88
NM_001001182 5734.2894
NM_001001183 1421.4375
NM_001001184 5304.9899
NM_001001186 509.7554
NM_001001187 261.4029
NM_001001295 1298.6202
NM_001001297 705.211
NM_001001303 50733.287
NM_001001309 408.6479
NM_001001318 74.7498
NM_001001319 18.6454

Total number of rows: 25631

Table truncated, full table size 486 Kbytes.




Supplementary file Size Download File type/resource
GSM558972_29481202_532.pair.gz 1.2 Mb (ftp)(http) PAIR
Processed data included within Sample table

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