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Sample GSM559008 Query DataSets for GSM559008
Status Public on Jun 30, 2010
Title Dmrt1 KO NGN-cre 12504802_532
Sample type RNA
 
Source name P9 testes
Organism Mus musculus
Characteristics tissue: juvenile testes
cre: Cre-positive
genotype: NGN-cre
age: P9
sex: Male
genotype: Dmrt1 KO
Extracted molecule total RNA
Extraction protocol RNA was isolated from P9 testes using TRIzolTM reagent (Life Technologies), further purified with the RNeasy minelute cleanup kit (Qiagen 74204), and RNA quality was verified with a 2100 Bioanalyzer (Agilent Technologies).
Label Cy3
Label protocol Standard Nimble protocol: RNA was reverse transcribed and hybridized to an MM8_60mer_expr array (NimbleGen A4543-00-01)
 
Hybridization protocol standard Nimblegen protocol
Scan protocol standard Nimblegen protocol
Data processing RMA
 
Submission date Jun 22, 2010
Last update date Jun 22, 2010
Contact name Aaron Sarver
Organization name University of Minnesota
Department Masonic Cancer Center
Lab Biostatistics and Informatics
Street address 425 East River Road
City Minneapolis
State/province MN
ZIP/Postal code 55455
Country USA
 
Platform ID GPL10572
Series (2)
GSE22507 Conditional Dmrt1 knockout gene expression (phase 7)
GSE22510 Conditional Dmrt1 knockout gene expression

Data table header descriptions
ID_REF
VALUE RMA Normalized signal intensity

Data table
ID_REF VALUE
NM_001001130 1305.374
NM_001001144 9097.572
NM_001001152 114.596
NM_001001160 3123.3495
NM_001001176 11053.4141
NM_001001177 3372.4878
NM_001001179 214.0136
NM_001001180 393.9405
NM_001001181 8977.4286
NM_001001182 3100.7329
NM_001001183 2521.0008
NM_001001184 5322.9391
NM_001001186 200.8743
NM_001001187 46.2297
NM_001001295 2832.7119
NM_001001297 769.3333
NM_001001303 57227.3495
NM_001001309 577.2083
NM_001001318 89.2327
NM_001001319 30.7635

Total number of rows: 25631

Table truncated, full table size 488 Kbytes.




Supplementary file Size Download File type/resource
GSM559008_12504802_532.pair.gz 1.2 Mb (ftp)(http) PAIR
Processed data included within Sample table

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