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Sample GSM559012 Query DataSets for GSM559012
Status Public on Jun 30, 2010
Title Control DHH-cre 19839902_532
Sample type RNA
 
Source name P9 testes
Organism Mus musculus
Characteristics tissue: juvenile testes
cre: Cre-negative
genotype: DHH-cre
age: P9
sex: Male
genotype: Control
Extracted molecule total RNA
Extraction protocol RNA was isolated from P9 testes using TRIzolTM reagent (Life Technologies), further purified with the RNeasy minelute cleanup kit (Qiagen 74204), and RNA quality was verified with a 2100 Bioanalyzer (Agilent Technologies).
Label Cy3
Label protocol Standard Nimble protocol: RNA was reverse transcribed and hybridized to an MM8_60mer_expr array (NimbleGen A4543-00-01)
 
Hybridization protocol standard Nimblegen protocol
Scan protocol standard Nimblegen protocol
Data processing RMA
 
Submission date Jun 22, 2010
Last update date Jun 22, 2010
Contact name Aaron Sarver
Organization name University of Minnesota
Department Masonic Cancer Center
Lab Biostatistics and Informatics
Street address 425 East River Road
City Minneapolis
State/province MN
ZIP/Postal code 55455
Country USA
 
Platform ID GPL10572
Series (2)
GSE22508 Conditional Dmrt1 knockout gene expression (phase 8)
GSE22510 Conditional Dmrt1 knockout gene expression

Data table header descriptions
ID_REF
VALUE RMA Normalized signal intensity

Data table
ID_REF VALUE
NM_001001130 2081.6266
NM_001001144 6572.8766
NM_001001152 457.7735
NM_001001160 3899.7641
NM_001001176 8380.1266
NM_001001177 2045.2958
NM_001001179 575.1266
NM_001001180 409.2351
NM_001001181 10239.3766
NM_001001182 2337.3766
NM_001001183 2038.0252
NM_001001184 4682.2241
NM_001001186 78.8234
NM_001001187 152.5278
NM_001001295 3101.9566
NM_001001297 605.0557
NM_001001303 39985.7508
NM_001001309 268.9028
NM_001001318 290.9447
NM_001001319 58.646

Total number of rows: 25631

Table truncated, full table size 493 Kbytes.




Supplementary file Size Download File type/resource
GSM559012.pair.gz 1.2 Mb (ftp)(http) PAIR
Processed data included within Sample table

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