NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM566585 Query DataSets for GSM566585
Status Public on Oct 01, 2011
Title IDFP2
Sample type RNA
 
Source name Mouse liver
Organism Mus musculus
Characteristics strain: Swiss-Webster
age: 7 weeks
gender: Male
tissue: Liver
treatment: isopropoyl dodecyl fluorophosphonate (IDFP) (10 mg/kg, i.p.)
Extracted molecule total RNA
Extraction protocol RNA was extracted with QIAGEN RNeasy mini kit including DNase I treatment in accordance with the prescribed protocol provided with the kit.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Illumina TotalPrep RNA Amplification Kit
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 2
Data processing The data were normalised using quantile normalisation with background substraction in Beadstudio 3.2
 
Submission date Jul 15, 2010
Last update date Oct 01, 2011
Contact name Max Ruby
E-mail(s) mruby@chori.org
Organization name Children's Hospital Oakland Reserach Institue
Lab Krauss
Street address 5700 Martin Luther King Jr. Way
City OAKLAND
State/province CA
ZIP/Postal code 94609
Country USA
 
Platform ID GPL6885
Series (1)
GSE22949 Cannabinoid Receptor 1 Dependent Effects of Isopropoyl dodeycl fluorophosphonate on Hepatic Gene Expression

Data table header descriptions
ID_REF
VALUE quantile normalized signal intensity
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 1926.523 0
ILMN_2721178 437.4792 0
ILMN_3033922 1224.953 0
ILMN_3092673 6449.268 0
ILMN_2816356 31.42567 0.04010025
ILMN_2808939 1253.607 0
ILMN_2634564 421.7645 0
ILMN_2737647 0.981313 0.377193
ILMN_2734484 849.3895 0
ILMN_2952292 76.75336 0.001253133
ILMN_2699078 -17.01511 0.9385965
ILMN_1213681 133.586 0
ILMN_2735413 538.6117 0
ILMN_2735415 585.3441 0
ILMN_2891688 931.5198 0
ILMN_2637698 583.0489 0
ILMN_2674228 114.837 0
ILMN_2601546 24.48004 0.05513784
ILMN_1230831 15.15968 0.1365915
ILMN_2848071 1092.282 0

Total number of rows: 25697

Table truncated, full table size 747 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap