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Sample GSM566605 Query DataSets for GSM566605
Status Public on Oct 01, 2011
Title DMSO4
Sample type RNA
 
Source name Mouse liver
Organism Mus musculus
Characteristics strain: Swiss-Webster
age: 7 weeks
gender: Male
tissue: Liver
treatment: DMSO
Extracted molecule total RNA
Extraction protocol RNA was extracted with QIAGEN RNeasy mini kit including DNase I treatment in accordance with the prescribed protocol provided with the kit.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Illumina TotalPrep RNA Amplification Kit
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 4
Data processing The data were normalised using quantile normalisation with background substraction in Beadstudio 3.2
 
Submission date Jul 15, 2010
Last update date Oct 01, 2011
Contact name Max Ruby
E-mail(s) mruby@chori.org
Organization name Children's Hospital Oakland Reserach Institue
Lab Krauss
Street address 5700 Martin Luther King Jr. Way
City OAKLAND
State/province CA
ZIP/Postal code 94609
Country USA
 
Platform ID GPL6885
Series (1)
GSE22949 Cannabinoid Receptor 1 Dependent Effects of Isopropoyl dodeycl fluorophosphonate on Hepatic Gene Expression

Data table header descriptions
ID_REF
VALUE quantile normalized signal intensity
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 1926.523 0
ILMN_2721178 473.8418 0
ILMN_3033922 1178.712 0
ILMN_3092673 7703.53 0
ILMN_2816356 38.68737 0.02255639
ILMN_2808939 1192.753 0
ILMN_2634564 549.4423 0
ILMN_2737647 7.942349 0.2230576
ILMN_2734484 950.966 0
ILMN_2952292 112.0235 0
ILMN_2699078 -8.735864 0.7155389
ILMN_1213681 139.9542 0
ILMN_2735413 551.9106 0
ILMN_2735415 591.0425 0
ILMN_2891688 644.6775 0
ILMN_2637698 695.9303 0
ILMN_2674228 131.2581 0
ILMN_2601546 29.85164 0.04385965
ILMN_1230831 6.169948 0.254386
ILMN_2848071 786.9241 0

Total number of rows: 25697

Table truncated, full table size 751 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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