|
| Status |
Public on Oct 11, 2023 |
| Title |
MDECs, negative mimic control#3 |
| Sample type |
SRA |
| |
|
| Source name |
Horse mammary derived epithelial cells incubated with negative mimic control + DMBA
|
| Organism |
Equus caballus |
| Characteristics |
cell type: mammary derived epithelial cells (MDECs)
treatment: negative mimic control + DMBA
genotype: control
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Libraries were prepared according to the Illumina TruSeq stranded mRNA sample preparation kit.
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 2500 |
| |
|
| Description |
RH6
|
| Data processing |
RNA-seq samples were aligned using STAR, quantified using Salmon, and normalized counts were determined using DESeq2
Genome_build: EquCab2
Supplementary_files_format_and_content: Normalized counts file is a comma-separated value matrix containing the DESeq2 normalized counts for each of the samples.
|
| |
|
| Submission date |
Nov 30, 2021 |
| Last update date |
Oct 11, 2023 |
| Contact name |
Praveen Sethupathy |
| Organization name |
Cornell University
|
| Lab |
Dr. Sethupathy Lab
|
| Street address |
Cornell University College of Veterinary Medicine, Box 17
|
| City |
Ithica |
| State/province |
NY |
| ZIP/Postal code |
14853 |
| Country |
USA |
| |
|
| Platform ID |
GPL21941 |
| Series (1) |
| GSE189879 |
miR-214-3p overexpression inhibits apoptotsis during induction of breast cancer |
|
| Relations |
| BioSample |
SAMN23515407 |
| SRA |
SRX13262769 |
