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Sample GSM5728462 Query DataSets for GSM5728462
Status Public on Dec 10, 2021
Title Sample57.Mouse.204529320025_R03C02
Sample type genomic
 
Source name Lung
Organism Mus musculus
Characteristics age: 1.75
Sex: Female
samplename: B6-5
genotype: WT
condition: Control
group: 6.B6-old
durationtreatment: 0
mouse strain: c57/B6
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from tissues
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to the the Beadchip HorvathMammalMethylChip40 using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA methylation from tissue=Lung species=Mouse
Data processing SeSaMe normalization as described in W. Zhou et al 2018. PMID: 30085201
 
Submission date Dec 10, 2021
Last update date Dec 10, 2021
Contact name Steve Horvath
E-mail(s) shorvath@altoslabs.com
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
 
Platform ID GPL28271
Series (1)
GSE190665 In vivo partial reprogramming in 4F mice

Supplementary file Size Download File type/resource
GSM5728462_204529320025_R03C02_Grn.idat.gz 385.1 Kb (ftp)(http) IDAT
GSM5728462_204529320025_R03C02_Red.idat.gz 387.6 Kb (ftp)(http) IDAT
Processed data are available on Series record

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