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Series GSE190665 Query DataSets for GSE190665
Status Public on Dec 10, 2021
Title In vivo partial reprogramming in 4F mice
Platform organisms Homo sapiens; Mus musculus; Rattus norvegicus
Sample organism Mus musculus
Experiment type Methylation profiling by array
Summary Partial reprogramming by expression of reprogramming factors (Oct4, Sox2, Klf4 and cMyc) for short periods of time restores a youthful epigenetic signature to aging cells and extends the lifespan of a premature aging mouse model. However, the effects of longer-term partial reprogramming in physiologically aging wild-type mice are unknown. Here, we have performed various long-term partial reprogramming regimens, including different onset timings, during physiological aging in different mouse strains. n=239 tissues from mice.
The study involves different conditions (treated and untreated samples) and leads to 7 groups: 1) Black6 mouse +Doxocycline 2) 4 factor mouse+1 month of Doxocycline. 3) 4F mice+7month of Dox 4) 4F+10 months of Dox 5) 4F mice which are relatively old 6) B6 mice that are relatively old 7) 4F mice which are relatively young.
 
Overall design n=168 mouse tissues (liver, spleen, skeletal muscle, lung). Genome annotations of the array can be downloaded from https://github.com/shorvath/MammalianMethylationConsortium
Web link https://www.nature.com/articles/s43587-022-00183-2
 
Contributor(s) Horvath S, Reddy P, Belmonte JC
Citation(s) 37563227, 38848365
Submission date Dec 10, 2021
Last update date Jun 26, 2024
Contact name Steve Horvath
E-mail(s) shorvath@altoslabs.com
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
 
Platforms (1)
GPL28271 Illumina HorvathMammalianMethylChip40 BeadChip
Samples (168)
GSM5728408 Sample1.Mouse.204529320080_R01C01
GSM5728409 Sample2.Mouse.204529320080_R02C01
GSM5728410 Sample3.Mouse.204529320080_R03C01
Relations
BioProject PRJNA787938

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE190665_Explanation_of_characteristic_variables.docx.gz 12.8 Kb (ftp)(http) DOCX
GSE190665_RAW.tar 126.1 Mb (http)(custom) TAR (of IDAT)
GSE190665_README.docx 12.8 Kb (ftp)(http) DOCX
GSE190665_datBetaNormalized.csv.gz 48.9 Mb (ftp)(http) CSV
Processed data are available on Series record

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