disease state: pediatric ependymoma methylation class: PF_EPN_A gender: Male who grade: 2 tumor location: PF event free survival: 28 overall survival: 81 survival status: Death recurrence: recurrence 1q gain: no gain resection status: Complete
Extracted molecule
genomic DNA
Extraction protocol
DNA extracted from formalin fixed, paraffin embedded material using the Qiagen ALLprep kit as per protocol.
Label
biotin/dnp
Label protocol
Illumina Protocol
Hybridization protocol
Illumina Protocol
Scan protocol
Illumina Protocol
Data processing
Bioconductor (version 3.3) package minifi (version 1.18) using function preprocessIllumina. Data filtered for SNPs, sex chromosomes and probes with detection p-value>0.01.