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Series GSE190798 Query DataSets for GSE190798
Status Public on Oct 02, 2023
Title Retrospective DNA Methylation profiles collated from Nottingham, UK
Organism Homo sapiens
Experiment type Methylation profiling by genome tiling array
Summary DNA Methylation profiles were generated for retrospective cases to support work into investigation of the immune environment in pediatric ependymoma. Samples were analyzed using the Illumina 450k beadchip and processed using the Heidelberg classifier (v11.2b and subsequently v12.3 for subgrouping/subtyping).
The aim of the study was to better understand the immune-tumor microenvironment in pediatric ependymoma and the methylation profiles support the diagnoses of each case.
 
Overall design 74 samples were analyzed and found to be consistent with ependymoma.
 
Contributor(s) Ritzmann TA, Chapman RJ, Griesinger A, Donson A, Paine SM, Grundy R, Foreman N
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Submission date Dec 13, 2021
Last update date Oct 02, 2023
Contact name Timothy A Ritzmann
E-mail(s) Timothy.ritzmann@nhs.net
Organization name University of Nottingham
Department Children's Brain Tumour Research Centre
Street address Coates Road
City Nottingham
ZIP/Postal code NG7 2UH
Country United Kingdom
 
Platforms (1)
GPL13534 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482)
Samples (74)
GSM5732113 Human Ependymoma Tissue (Epend92P)
GSM5732114 Human Ependymoma Tissue (Epend118P)
GSM5732115 Human Ependymoma Tissue (Epend33R)
Relations
BioProject PRJNA788486

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE190798_RAW.tar 773.5 Mb (http)(custom) TAR (of IDAT)
GSE190798_signals.txt.gz 179.8 Mb (ftp)(http) TXT
Processed data included within Sample table
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