DNA extracted from formalin fixed, paraffin embedded material using the Qiagen ALLprep kit as per protocol.
Label
biotin/dnp
Label protocol
Illumina Protocol
Hybridization protocol
Illumina Protocol
Scan protocol
Illumina Protocol
Data processing
Bioconductor (version 3.3) package minifi (version 1.18) using function preprocessIllumina. Data filtered for SNPs, sex chromosomes and probes with detection p-value>0.01.