|
| Status |
Public on Feb 03, 2022 |
| Title |
Input_Postive 3 |
| Sample type |
SRA |
| |
|
| Source name |
liver
|
| Organism |
Gallus gallus |
| Characteristics |
treatment: Inoculated intraamdominally with 10^3.7 TCID50/0.2 mL virulent ALV-J strain NX0101 at 1 day of age
tissue: liver
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA extraction protocol
library construction protocol
|
| |
|
| Library strategy |
OTHER |
| Library source |
transcriptomic |
| Library selection |
other |
| Instrument model |
Illumina NovaSeq 6000 |
| |
|
| Data processing |
Library strategy: MeRIP-seq
clean reads of input libraries were aligned to reference genome by STAR software.
circRNAs were identified by DCC software
clean reads of all libraries were aligned to the reference genome by Hisat2 software (v2.0.4)
Methylated sites on RNAs (peaks) were identified by MACS software
Differentially methylated sites were identified by diffReps.
Genome_build: GCF_000002315.6_GRCg6a
Supplementary_files_format_and_content: excel format: Number of raw junction read
|
| |
|
| Submission date |
Jan 02, 2022 |
| Last update date |
Feb 03, 2022 |
| Contact name |
Qiqi Zhao |
| Organization name |
South China Agricultural University
|
| Street address |
483 WUSHAN ROAD
|
| City |
Guangzhou |
| ZIP/Postal code |
510642 |
| Country |
China |
| |
|
| Platform ID |
GPL26853 |
| Series (1) |
| GSE192892 |
MeRIP Sequencing of Tumor Livers Induced by ALV-J Infection in Chickens |
|
| Relations |
| BioSample |
SAMN24579031 |
| SRA |
SRX13577599 |
