|
| Status |
Public on Mar 01, 2022 |
| Title |
I656tgF |
| Sample type |
SRA |
| |
|
| Source name |
Hair root
|
| Organism |
Callithrix jacchus |
| Characteristics |
genotype: Transgene
tissue: Hair root
cell type: Fibroblasts
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Standard genomic DNA extraction and purification.
DNA libraries were prepared for sequencing using standard MGI protocols performed by Azenta Life Sciences, Japan.
|
| |
|
| Library strategy |
OTHER |
| Library source |
genomic |
| Library selection |
other |
| Instrument model |
DNBSEQ-G400 |
| |
|
| Description |
Marmoset
Generated using the lentivirus vector pLenti6_4_EF_Aswind_2AKO.
Whole genome sequencing (WGS)
|
| Data processing |
Library strategy: WGS
Data of WGS (fastq file format) were quality-checked.
The remaining reads were mapped to the marmoset genome (cj1700) using bowtie2.
Discordant and Split reads were used to identify transgene insertion regions.
Genome_build: cj1700
Supplementary_files_format_and_content: Insertion_site.xlsx describes the transgene integration sites in the genome.
|
| |
|
| Submission date |
Jan 19, 2022 |
| Last update date |
Mar 01, 2022 |
| Contact name |
Sho Yoshimatsu |
| E-mail(s) |
yoshima@a7.keio.jp
|
| Organization name |
Keio University School of Medicine
|
| Department |
Physiology
|
| Lab |
Hideyuki Okano's Lab
|
| Street address |
35 Shinanomachi
|
| City |
Shinjuku |
| State/province |
Tokyo |
| ZIP/Postal code |
160-8582 |
| Country |
Japan |
| |
|
| Platform ID |
GPL31253 |
| Series (2) |
| GSE194005 |
Multimodal analyses of a non-human primate model harboring mutant amyloid precursor protein transgenes driven by the human EF1α promoter [WGS] |
| GSE194006 |
Multimodal analyses of a non-human primate model harboring mutant amyloid precursor protein transgenes driven by the human EF1α promoter |
|
| Relations |
| BioSample |
SAMN25124045 |
| SRA |
SRX13834186 |
