|
| Status |
Public on Feb 25, 2022 |
| Title |
HBV/HDV+ mouse 22 |
| Sample type |
SRA |
| |
|
| Source name |
liver
|
| Organisms |
Homo sapiens; Mus musculus |
| Characteristics |
tissue: liver
time: 12 weeks post-HBV infection, 8 weeks post-HDV infection
host organism: FRG-NOD mice
xenograft organism: human
model: humanized mouse liver model FRG KO
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Qiagen Allprep kit
Illumina TruSeq Stranded mRNA
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NovaSeq 6000 |
| |
|
| Description |
22HDVw12
|
| Data processing |
Reads were generated using GASAVA v. 1.8.2 and clipped for low qualited bases using proprietary software developed by Q2 Solutions.
Clipped fastq files were aligned to reference genome using STAR2.7
gene level quantification using featureCounts v1.4.6-p1 with Gencode annotation v32.
Genome_build: hg38 & mm10
Supplementary_files_format_and_content: Tab separated gene count matrix
|
| |
|
| Submission date |
Jan 20, 2022 |
| Last update date |
Feb 25, 2022 |
| Contact name |
Ricardo Ramirez |
| Organization name |
Gilead Sciences
|
| Street address |
333 Lakeside Drive
|
| City |
Foster City |
| State/province |
CA |
| ZIP/Postal code |
94404 |
| Country |
USA |
| |
|
| Platform ID |
GPL25526 |
| Series (2) |
| GSE194066 |
Study of HBV and HDV transcriptomic modulation |
| GSE194181 |
HBV and HDV transcriptomic modulation |
|
| Relations |
| BioSample |
SAMN25142327 |
| SRA |
SRX13843749 |
