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Sample GSM588088 Query DataSets for GSM588088
Status Public on Oct 01, 2010
Title Strain QX1 (Cy5) vs Common Reference (Cy3)
Sample type RNA
 
Channel 1
Source name GreensonjaWORMS_251506110096_S01.tif
Organism Caenorhabditis elegans
Characteristics strain name: Strain QX1
Biomaterial provider Matt Rockman, Kruglyak Lab, Princeton University
Extracted molecule total RNA
Extraction protocol Extraction method: Trizol followed by Qiagen Rneasy Kit
Label Cy3
Label protocol Type of label: Cy3
reference URL: http://www.chem.agilent.com/scripts/LiteraturePDF.asp?iWHID=32636
 
Channel 2
Source name RedsonjaWORMS_251506110096_S01.tif
Organism Caenorhabditis elegans
Characteristics strain source: Mixed strain, mixed stage, N2 and CB4856
Biomaterial provider Matt Rockman, Kruglyak Lab, Princeton University
Extracted molecule total RNA
Extraction protocol Extraction method: Trizol followed by Qiagen Rneasy Kit
Label Cy5
Label protocol Type of label: Cy5
reference URL: http://www.chem.agilent.com/scripts/LiteraturePDF.asp?iWHID=32636
 
 
Hybridization protocol reference URL: http://www.chem.agilent.com/scripts/LiteraturePDF.asp?iWHID=48835
Scan protocol Pixel Size: 5
Scan Date: 2007-08-10
Scan Time: 11:01:40
Scanner Make: Agilent Technologies Scanner
Scanner Model: G2505B
Scanning software: ChipScan
Scanning software version: A.7.0.1
Description Strain QX1 (Cy5) vs Common Reference (Cy3)
Data processing Extraction Software: Agilent Feature Extractor
Extraction Software Version: 9.1.3.1
Datafile type: Agilent result file
Agilent feature extraction software was used to perform dye bias correction and linear normalization.
 
Submission date Aug 27, 2010
Last update date Aug 31, 2010
Contact name Matthew Rockman
E-mail(s) mrockman@nyu.edu
Organization name New York University
Street address 100 Washington Sq. E.
City New York
State/province NY
ZIP/Postal code 10003
Country USA
 
Platform ID GPL7727
Series (1)
GSE23857 QX recombinant inbred advanced intercross lines of C. elegans

Data table header descriptions
ID_REF Uniquely identifies feature/spot in array layout.
VALUE log(base 2) (R_PROCESSED_SIGNAL/G_PROCESSED_SIGNAL)
R_PROCESSED_SIGNAL The propagated feature signal in the red channel, used for computation of log ratio
G_PROCESSED_SIGNAL The propagated feature signal in the green channel, used for computation of log ratio
R_MEAN_SIGNAL Mean foreground intensity Ch 2.
G_MEAN_SIGNAL Mean foreground intensity Ch 1.

Data table
ID_REF VALUE R_PROCESSED_SIGNAL G_PROCESSED_SIGNAL R_MEAN_SIGNAL G_MEAN_SIGNAL
1 .389 145823.7 111337.5 64373.74 23499.58
2 0 14.45404 12.21817 25.25862 22.77586
3 0 14.56425 12.30959 24.88333 24.51667
4 0 14.66293 12.39147 24.93443 23.42623
5 0 14.75364 12.46677 23.93333 23.58333
6 0 14.83836 12.53703 26.7377 23.88525
7 0 14.91139 12.59772 24.43548 24.53226
8 0 14.97867 12.65369 24.53333 22.56667
9 0 15.03699 12.70223 27.27273 23.45455
10 0 15.08864 12.74528 22.33871 23.12903
11 0 15.13328 12.78256 25.8 25.6
12 -1.273 6136.993 14835.7 2588.651 2984.889
13 -.338 113.1227 143.0226 76.33898 54.05085
14 -1.065 50.43319 105.5483 50.48333 46.68333
15 -2.829 15.24815 108.3417 34.3125 47.34375
16 .105 158.6869 147.5726 95.92308 55.23077
17 .205 13409.74 11632.5 5586.726 2331.161
18 -.264 431.5853 518.2715 209.5424 128.8814
19 -1.006 2061.773 4139.737 884.9063 846.2656
20 -1.374 77.78525 201.6535 63.5873 66.47619

Total number of rows: 44381

Table truncated, full table size 2006 Kbytes.




Supplementary file Size Download File type/resource
GSM588088.txt.gz 11.7 Mb (ftp)(http) TXT
Processed data included within Sample table

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