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Status
Public on Dec 02, 2008
Title
Agilent-015061 C. elegans Oligo Microarray 4x44K G2519F (Feature Number version)
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Caenorhabditis elegans
Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Catalog number
G2519F
Description
This microarray provides genome-wide coverage of C. elegans with over 21,000 predicted genes from WormBase, a public C. elegans genome database. Arrays of this design have barcodes that begin with 16015061 or 2515061. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions. *** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL8209
Submission date
Dec 02, 2008
Last update date
Dec 06, 2012
Organization
Agilent Technologies
E-mail(s)
cag_sales-na@agilent.com
Phone
877-424-4536
URL
http://www.agilent.com
Department
Street address
City
Palo Alto
State/province
CA
ZIP/Postal code
94304
Country
USA
Samples (301)
GSM360120 , GSM360121 , GSM360122 , GSM360123 , GSM360124 , GSM360125
GSM360126 ,
GSM360127 ,
GSM360128 ,
GSM360129 ,
GSM360130 ,
GSM360131 ,
GSM575204 ,
GSM575205 ,
GSM575206 ,
GSM575207 ,
GSM575208 ,
GSM575209 ,
GSM575210 ,
GSM575211 ,
GSM575212 ,
GSM575213 ,
GSM575214 ,
GSM575215 ,
GSM575216 ,
GSM575217 ,
GSM575218 ,
GSM575219 ,
GSM575220 ,
GSM588088 ,
GSM588089 ,
GSM588090 ,
GSM588091 ,
GSM588092 ,
GSM588093 ,
GSM588094 ,
GSM588095 ,
GSM588096 ,
GSM588097 ,
GSM588098 ,
GSM588099 ,
GSM588100 ,
GSM588101 ,
GSM588102 ,
GSM588103 ,
GSM588104 ,
GSM588105 ,
GSM588106 ,
GSM588107 ,
GSM588108 ,
GSM588109 ,
GSM588110 ,
GSM588111 ,
GSM588112 ,
GSM588113 ,
GSM588114 ,
GSM588115 ,
GSM588116 ,
GSM588117 ,
GSM588118 ,
GSM588119 ,
GSM588120 ,
GSM588121 ,
GSM588122 ,
GSM588123 ,
GSM588124 ,
GSM588125 ,
GSM588126 ,
GSM588127 ,
GSM588128 ,
GSM588129 ,
GSM588130 ,
GSM588131 ,
GSM588132 ,
GSM588133 ,
GSM588134 ,
GSM588135 ,
GSM588136 ,
GSM588137 ,
GSM588138 ,
GSM588139 ,
GSM588140 ,
GSM588141 ,
GSM588142 ,
GSM588143 ,
GSM588144 ,
GSM588145 ,
GSM588146 ,
GSM588147 ,
GSM588148 ,
GSM588149 ,
GSM588150 ,
GSM588151 ,
GSM588152 ,
GSM588153 ,
GSM588154 ,
GSM588155 ,
GSM588156 ,
GSM588157 ,
GSM588158 ,
GSM588159 ,
GSM588160 ,
GSM588161 ,
GSM588162 ,
GSM588163 ,
GSM588164 ,
GSM588165 ,
GSM588166 ,
GSM588167 ,
GSM588168 ,
GSM588169 ,
GSM588170 ,
GSM588171 ,
GSM588172 ,
GSM588173 ,
GSM588174 ,
GSM588175 ,
GSM588176 ,
GSM588177 ,
GSM588178 ,
GSM588179 ,
GSM588180 ,
GSM588181 ,
GSM588182 ,
GSM588183 ,
GSM588184 ,
GSM588185 ,
GSM588186 ,
GSM588187 ,
GSM588188 ,
GSM588189 ,
GSM588190 ,
GSM588191 ,
GSM588192 ,
GSM588193 ,
GSM588194 ,
GSM588195 ,
GSM588196 ,
GSM588197 ,
GSM588198 ,
GSM588199 ,
GSM588200 ,
GSM588201 ,
GSM588202 ,
GSM588203 ,
GSM588204 ,
GSM588205 ,
GSM588206 ,
GSM588207 ,
GSM588208 ,
GSM588209 ,
GSM588210 ,
GSM588211 ,
GSM588212 ,
GSM588213 ,
GSM588214 ,
GSM588215 ,
GSM588216 ,
GSM588217 ,
GSM588218 ,
GSM588219 ,
GSM588220 ,
GSM588221 ,
GSM588222 ,
GSM588223 ,
GSM588224 ,
GSM588225 ,
GSM588226 ,
GSM588227 ,
GSM588228 ,
GSM588229 ,
GSM588230 ,
GSM588231 ,
GSM588232 ,
GSM588233 ,
GSM588234 ,
GSM588235 ,
GSM588236 ,
GSM588237 ,
GSM588238 ,
GSM588239 ,
GSM588240 ,
GSM588241 ,
GSM588242 ,
GSM588243 ,
GSM588244 ,
GSM588245 ,
GSM588246 ,
GSM588247 ,
GSM588248 ,
GSM588249 ,
GSM588250 ,
GSM588251 ,
GSM588252 ,
GSM588253 ,
GSM588254 ,
GSM588255 ,
GSM588256 ,
GSM588257 ,
GSM588258 ,
GSM588259 ,
GSM588260 ,
GSM588261 ,
GSM588262 ,
GSM588263 ,
GSM588264 ,
GSM588265 ,
GSM588266 ,
GSM588267 ,
GSM588268 ,
GSM588269 ,
GSM588270 ,
GSM588271 ,
GSM588272 ,
GSM588273 ,
GSM588274 ,
GSM588275 ,
GSM588276 ,
GSM588277 ,
GSM588278 ,
GSM588279 ,
GSM588280 ,
GSM588281 ,
GSM588282 ,
GSM588283 ,
GSM588284 ,
GSM588285 ,
GSM588286 ,
GSM588287 ,
GSM588288 ,
GSM588289 ,
GSM588290 ,
GSM588291 ,
GSM588292 ,
GSM588293 ,
GSM588294 ,
GSM588295 ,
GSM631538 ,
GSM631539 ,
GSM631540 ,
GSM631541 ,
GSM631542 ,
GSM631543 ,
GSM631544 ,
GSM631545 ,
GSM631546 ,
GSM631547 ,
GSM700258 ,
GSM700259 ,
GSM700260 ,
GSM700261 ,
GSM700262 ,
GSM700263 ,
GSM700264 ,
GSM700265 ,
GSM716476 ,
GSM716477 ,
GSM716478 ,
GSM716479 ,
GSM716480 ,
GSM716481 ,
GSM716482 ,
GSM716483 ,
GSM716484 ,
GSM716485 ,
GSM716486 ,
GSM716487 ,
GSM716488 ,
GSM716489 ,
GSM716490 ,
GSM716491 ,
GSM716492 ,
GSM716493 ,
GSM716494 ,
GSM716495 ,
GSM716496 ,
GSM716497 ,
GSM716498 ,
GSM716499 ,
GSM824416 ,
GSM824417 ,
GSM824418 ,
GSM824419 ,
GSM824420 ,
GSM824421 ,
GSM824422 ,
GSM824423 ,
GSM1183258 ,
GSM1183259 ,
GSM1183260 ,
GSM1183261 ,
GSM1183262 ,
GSM1183263 ,
GSM1183264 ,
GSM1183265 ,
GSM1183266 ,
GSM1183267 ,
GSM1183268 ,
GSM1183269 ,
GSM1183270 ,
GSM1183271
Series (11)
GSE14475
Gene expression profiling of C. elegans under various thermal conditions
GSE23446
Reproductive aging: sma-2;fem-1 day 8 oocyte vs fem-1 day 8 oocyte
GSE23447
Reproductive aging: fem-1 day 3 oocyte vs fem-1 day 8 oocyte
GSE23448
Body size regulation and TGF-beta Sma/Mab pathway: sma L4 vs N2 L4
GSE23509
TGF-beta Sma/Mab signaling regulates a set of genes in oocytes associated with reproductive aging and another set in L4 associated with body size growth
GSE23857
QX recombinant inbred advanced intercross lines of C. elegans
GSE25714
Novel roles of C. elegans heterochromatin protein HP1 and linker histone HIS-24 in the regulation of innate immune gene expression and stress Response
GSE28301
Extension of lifespan in C. elegans by naphthoquinones that act through stress hormesis mechanisms
GSE28915
Toxicogenomic Responses to Inorganic and Organic Mercury in Caenorhabditis elegans
GSE33339
Transcriptional repression of Hox genes by binding of HP1 and methylated H1 to H3K27me3 in C. elegans
GSE48675
Comparison of gene expression profiles between N2 wild-type C. elegans and an nhr-8(hd117) mutant
Relations
Alternative to
GPL8209
Data table header descriptions
ID
Agilent feature number
COL
Column
ROW
Row
ORF
ORF Name
SPOT
Spot identifier
CONTROL_TYPE
Control type
ACCESSION_STRING
Accession String
CHROMOSOMAL_LOCATION
Chromosomal Location
DESCRIPTION
Description
SEQUENCE
SPOT_ID
Data table
ID
COL
ROW
ORF
SPOT
CONTROL_TYPE
ACCESSION_STRING
CHROMOSOMAL_LOCATION
DESCRIPTION
SEQUENCE
SPOT_ID
1
266
170
GE_BrightCorner
pos
CONTROL
2
266
168
DarkCorner
pos
CONTROL
3
266
166
DarkCorner
pos
CONTROL
4
266
164
DarkCorner
pos
CONTROL
5
266
162
DarkCorner
pos
CONTROL
6
266
160
DarkCorner
pos
CONTROL
7
266
158
DarkCorner
pos
CONTROL
8
266
156
DarkCorner
pos
CONTROL
9
266
154
DarkCorner
pos
CONTROL
10
266
152
DarkCorner
pos
CONTROL
11
266
150
DarkCorner
pos
CONTROL
12
266
148
Y37E11AM.1
A_12_P108045
FALSE
wb|Y37E11AM.1
chrIV:3735343-3735402
AATCGTACTATGAAAAGCTTCTGAAACGGCAGAAAGCAAAGGAAGATGACGAGAAGACGG
13
266
146
C01F1.4
A_12_P108879
FALSE
wb|C01F1.4
chrII:4279055-4279114
AAGTGAGCTTGAGCCACTGAAAACGAGATGCTCACAACCAAATGCACATTCTGTGATGCT
14
266
144
R90.3
A_12_P115540
FALSE
wb|R90.3
chrV:12906994-12906935
Transthyretin-like family [R90.3]
TCACTTCCGGTAGTCAACCATCACGAACTTTTGACATTGGCACATTGAACTTGGCCAACA
15
266
142
T27B7.2
A_12_P101622
FALSE
wb|T27B7.2
chrV:2288254-2288195
zinc finger protein [T27B7.2]
GAAACACGACCGCACCGGGAGTTGGGAAAAGTTTTCAACGTTTTGAAGACGGAATTTTCA
16
266
140
B0024.3
A_12_P105685
FALSE
wb|B0024.3
chrV:10291666-10291725
TGCGGCAATTCAAGAACAACTAGAACACGAACAGAAACGGATATTCCAATGATAAAAGTA
17
266
138
Y53H1B.2
A_12_P117297
FALSE
wb|Y53H1B.2
chrI:11300819-11300760
CCAATGCCAGATCTTACCGAGGTTCAGATTCAGGGAGAGGAGACTGATGTTTAACCTTTT
18
266
136
T14B4.8
A_12_P104093
FALSE
wb|T14B4.8
chrII:6720427-6720368
TTGTACATTAAGCAGAGCTGTTGTCACTCGAACATCTCCATCTTGTTTTCCTTTCTTTCG
19
266
134
F57C9.4a
A_12_P120371
FALSE
wb|F57C9.4a
chrI:4833643-4833749
TTCAATCTCCGTGCATCTAAAGTACATTACGAAGACTATAGCCCTGGTGATGCATCTACA
20
266
132
Y20C6A.2
A_12_P117675
FALSE
wb|Y20C6A.2
chrV:17383606-17383665
AGGAGGACGGTATATTCAAAGCAAAGATGGAATTACTGCCGTTGTCGGGTTTCGATTTCT
Total number of rows: 45220 Table truncated, full table size 6602 Kbytes .
Supplementary file
Size
Download
File type/resource
GPL7727_old_annotations.txt.gz
2.3 Mb
(ftp) (http)
TXT