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Sample GSM588138 Query DataSets for GSM588138
Status Public on Oct 01, 2010
Title Strain QX67 (Cy5) vs Common Reference (Cy3)
Sample type RNA
 
Channel 1
Source name GreensonjaWORMS_251506110168_S01.tif
Organism Caenorhabditis elegans
Characteristics strain name: Strain QX67
Biomaterial provider Matt Rockman, Kruglyak Lab, Princeton University
Extracted molecule total RNA
Extraction protocol Extraction method: Trizol followed by Qiagen Rneasy Kit
Label Cy3
Label protocol Type of label: Cy3
reference URL: http://www.chem.agilent.com/scripts/LiteraturePDF.asp?iWHID=32636
 
Channel 2
Source name RedsonjaWORMS_251506110168_S01.tif
Organism Caenorhabditis elegans
Characteristics strain source: Mixed strain, mixed stage, N2 and CB4856
Biomaterial provider Matt Rockman, Kruglyak Lab, Princeton University
Extracted molecule total RNA
Extraction protocol Extraction method: Trizol followed by Qiagen Rneasy Kit
Label Cy5
Label protocol Type of label: Cy5
reference URL: http://www.chem.agilent.com/scripts/LiteraturePDF.asp?iWHID=32636
 
 
Hybridization protocol reference URL: http://www.chem.agilent.com/scripts/LiteraturePDF.asp?iWHID=48835
Scan protocol Pixel Size: 5
Scan Date: 2007-08-03
Scan Time: 11:46:46
Scanner Make: Agilent Technologies Scanner
Scanner Model: G2505B
Scanning software: ChipScan
Scanning software version: A.7.0.1
Description Strain QX67 (Cy5) vs Common Reference (Cy3)
Data processing Extraction Software: Agilent Feature Extractor
Extraction Software Version: 9.1.3.1
Datafile type: Agilent result file
Agilent feature extraction software was used to perform dye bias correction and linear normalization.
 
Submission date Aug 27, 2010
Last update date Aug 31, 2010
Contact name Matthew Rockman
E-mail(s) mrockman@nyu.edu
Organization name New York University
Street address 100 Washington Sq. E.
City New York
State/province NY
ZIP/Postal code 10003
Country USA
 
Platform ID GPL7727
Series (1)
GSE23857 QX recombinant inbred advanced intercross lines of C. elegans

Data table header descriptions
ID_REF Uniquely identifies feature/spot in array layout.
VALUE log(base 2) (R_PROCESSED_SIGNAL/G_PROCESSED_SIGNAL)
R_PROCESSED_SIGNAL The propagated feature signal in the red channel, used for computation of log ratio
G_PROCESSED_SIGNAL The propagated feature signal in the green channel, used for computation of log ratio
R_MEAN_SIGNAL Mean foreground intensity Ch 2.
G_MEAN_SIGNAL Mean foreground intensity Ch 1.

Data table
ID_REF VALUE R_PROCESSED_SIGNAL G_PROCESSED_SIGNAL R_MEAN_SIGNAL G_MEAN_SIGNAL
1 .463 51577.43 37419.74 28987.48 7920.625
2 0 13.71122 13.14017 33.54839 22.22581
3 0 13.76948 13.187 32.46774 24
4 0 13.82391 13.23059 35.40625 20.5625
5 0 13.87325 13.26996 34.01587 22.04762
6 0 13.91777 13.30536 33.81034 22.72414
7 0 13.9589 13.33794 33.22034 22.10169
8 0 13.99523 13.36661 36 23.8806
9 0 14.02692 13.39166 35 23.71667
10 0 14.0575 13.4155 36.25 24.79688
11 0 14.08223 13.43508 35.85714 26.01587
12 -.595 4132.803 6241.636 2289.438 1308.875
13 -.255 79.44033 94.82906 88.83333 47.37879
14 .635 146.7649 94.49519 125.6508 47.39683
15 1.254 138.4052 58.03769 121.4407 40.0339
16 -.65 30.1298 47.26971 63.22581 37.93548
17 -.527 4740.611 6833.048 2608.531 1425.141
18 -.317 259.0998 322.6768 187.661 94.44068
19 -.399 1713.043 2259.515 972.8889 490.1905
20 -1.526 48.63658 140.0584 74.8871 57.37097

Total number of rows: 44381

Table truncated, full table size 2000 Kbytes.




Supplementary file Size Download File type/resource
GSM588138.txt.gz 11.7 Mb (ftp)(http) TXT
Processed data included within Sample table

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