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Sample GSM588214 Query DataSets for GSM588214
Status Public on Oct 01, 2010
Title Strain QX231 (Cy3) vs Common Reference (Cy5)
Sample type RNA
 
Channel 1
Source name GreensonjaWORMS_251506110076_S01.tif
Organism Caenorhabditis elegans
Characteristics strain name: Strain QX231
Biomaterial provider Matt Rockman, Kruglyak Lab, Princeton University
Extracted molecule total RNA
Extraction protocol Extraction method: Trizol followed by Qiagen Rneasy Kit
Label Cy5
Label protocol Type of label: Cy5
reference URL: http://www.chem.agilent.com/scripts/LiteraturePDF.asp?iWHID=32636
 
Channel 2
Source name RedsonjaWORMS_251506110076_S01.tif
Organism Caenorhabditis elegans
Characteristics strain source: Mixed strain, mixed stage, N2 and CB4856
Biomaterial provider Matt Rockman, Kruglyak Lab, Princeton University
Extracted molecule total RNA
Extraction protocol Extraction method: Trizol followed by Qiagen Rneasy Kit
Label Cy3
Label protocol Type of label: Cy3
reference URL: http://www.chem.agilent.com/scripts/LiteraturePDF.asp?iWHID=32636
 
 
Hybridization protocol reference URL: http://www.chem.agilent.com/scripts/LiteraturePDF.asp?iWHID=48835
Scan protocol Pixel Size: 5
Scan Date: 2007-03-09
Scan Time: 12:48:40
Scanner Make: Agilent Technologies Scanner
Scanner Model: G2505B
Scanning software: ChipScan
Scanning software version: A.7.0.1
Description Strain QX231 (Cy3) vs Common Reference (Cy5)
Data processing Extraction Software: Agilent Feature Extractor
Extraction Software Version: 9.1.3.1
Datafile type: Agilent result file
Agilent feature extraction software was used to perform dye bias correction and linear normalization.
 
Submission date Aug 27, 2010
Last update date Aug 31, 2010
Contact name Matthew Rockman
E-mail(s) mrockman@nyu.edu
Organization name New York University
Street address 100 Washington Sq. E.
City New York
State/province NY
ZIP/Postal code 10003
Country USA
 
Platform ID GPL7727
Series (1)
GSE23857 QX recombinant inbred advanced intercross lines of C. elegans

Data table header descriptions
ID_REF Uniquely identifies feature/spot in array layout.
VALUE log(base 2) (G_PROCESSED_SIGNAL/R_PROCESSED_SIGNAL)
R_PROCESSED_SIGNAL The propagated feature signal in the red channel, used for computation of log ratio
G_PROCESSED_SIGNAL The propagated feature signal in the green channel, used for computation of log ratio
R_MEAN_SIGNAL Mean foreground intensity Ch 2.
G_MEAN_SIGNAL Mean foreground intensity Ch 1.

Data table
ID_REF VALUE R_PROCESSED_SIGNAL G_PROCESSED_SIGNAL R_MEAN_SIGNAL G_MEAN_SIGNAL
1 -0.079 19316.52 18284.38 11685.95 7095.77
2 0 4.961466 4.497793 24.6 20.26667
3 0 5.004671 4.532472 25.54688 21.8125
4 0 5.045327 4.564909 26.5 21.625
5 0 5.082464 4.594327 26.74194 21.35484
6 0 5.116495 4.621083 27.72881 19.0339
7 0 5.147561 4.645296 27.71429 21.38095
8 0 5.175407 4.666807 27.75 22.31667
9 0 5.20093 4.686324 27.21311 22.39344
10 0 5.223503 4.703366 28.25373 21.52239
11 0 5.24331 4.718106 27.50769 21.53846
12 -0.087 5498.056 5176.409 3129.333 1910.788
13 0.101 85.13915 91.32789 77 55.84127
14 0.506 84.78028 120.3911 76.80328 66.40984
15 2.095 43.82505 187.2727 53.90323 90.67742
16 -0.274 68.32895 56.52637 67.68254 43.31746
17 -0.132 7166.995 6539.151 4029.215 2389.646
18 -0.295 292.4628 238.4356 192.8154 109.2462
19 0.275 2172.674 2628.162 1240.485 973.5606
20 0.05 160.9323 166.6189 119.6774 83.41935

Total number of rows: 44381

Table truncated, full table size 2040 Kbytes.




Supplementary file Size Download File type/resource
GSM588214.txt.gz 11.6 Mb (ftp)(http) TXT
Processed data included within Sample table
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