|
| Status |
Public on Oct 01, 2010 |
| Title |
Strain QX109 (Cy3) vs Common Reference (Cy5) |
| Sample type |
RNA |
| |
|
| Channel 1 |
| Source name |
GreenKRUSMS20071205_251506110243_S01.tif
|
| Organism |
Caenorhabditis elegans |
| Characteristics |
strain name: Strain QX109
|
| Biomaterial provider |
Matt Rockman, Kruglyak Lab, Princeton University
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Extraction method: Trizol followed by Qiagen Rneasy Kit
|
| Label |
Cy5
|
| Label protocol |
Type of label: Cy5
reference URL: http://www.chem.agilent.com/scripts/LiteraturePDF.asp?iWHID=32636
|
| |
|
| Channel 2 |
| Source name |
RedKRUSMS20071205_251506110243_S01.tif
|
| Organism |
Caenorhabditis elegans |
| Characteristics |
strain source: Mixed strain, mixed stage, N2 and CB4856
|
| Biomaterial provider |
Matt Rockman, Kruglyak Lab, Princeton University
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Extraction method: Trizol followed by Qiagen Rneasy Kit
|
| Label |
Cy3
|
| Label protocol |
Type of label: Cy3
reference URL: http://www.chem.agilent.com/scripts/LiteraturePDF.asp?iWHID=32636
|
| |
|
| |
| Hybridization protocol |
reference URL: http://www.chem.agilent.com/scripts/LiteraturePDF.asp?iWHID=48835
|
| Scan protocol |
Pixel Size: 5
Scan Date: 2007-12-05
Scan Time: 10:15:37
Scanner Make: Agilent Technologies Scanner
Scanner Model: G2505B
Scanning software: ChipScan
Scanning software version: A.7.0.1
|
| Description |
Strain QX109 (Cy3) vs Common Reference (Cy5)
|
| Data processing |
Extraction Software: Agilent Feature Extractor
Extraction Software Version: 9.5.3.1
Datafile type: Agilent result file
Agilent feature extraction software was used to perform dye bias correction and linear normalization.
|
| |
|
| Submission date |
Aug 27, 2010 |
| Last update date |
Aug 31, 2010 |
| Contact name |
Matthew Rockman |
| E-mail(s) |
mrockman@nyu.edu
|
| Organization name |
New York University
|
| Street address |
100 Washington Sq. E.
|
| City |
New York |
| State/province |
NY |
| ZIP/Postal code |
10003 |
| Country |
USA |
| |
|
| Platform ID |
GPL7727 |
| Series (1) |
| GSE23857 |
QX recombinant inbred advanced intercross lines of C. elegans |
|
