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| Status |
Public on May 13, 2022 |
| Title |
Cerebral organoid cells, Donor 16 Replicate 1, Day 46 |
| Sample type |
SRA |
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| Source name |
Cerebral organoids
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| Organism |
Homo sapiens |
| Characteristics |
cell type: Cerebral organoids
genotype: 15q11-13 duplication
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| Extracted molecule |
total RNA |
| Extraction protocol |
PureLink RNA Mini Kit
TruSeq Stranded Total RNA
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| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
HiSeq X Ten |
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| Description |
16_1
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| Data processing |
FastQC v0.10.0
Trimmomatic v0.32
TopHat v2.0.13, bowtie2 2.2.3
Cufflinks v2.2.1
STAR 2.4.0f1, GATK 3.3-0
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| Submission date |
Apr 14, 2022 |
| Last update date |
May 13, 2022 |
| Contact name |
Elaine Lim |
| Organization name |
UMass Chan Medical School
|
| Street address |
366 Plantation Street, N5-1025
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| City |
Worcester |
| State/province |
MA |
| ZIP/Postal code |
01605 |
| Country |
USA |
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| Platform ID |
GPL20795 |
| Series (1) |
| GSE200851 |
Orgo-Seq integrates single-cell and bulk transcriptomic data to identify cell type specific-driver genes associated with autism spectrum disorder |
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| Relations |
| BioSample |
SAMN27401745 |
| SRA |
SRX14777669 |
| Supplementary data files not provided |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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