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Series GSE200851 Query DataSets for GSE200851
Status Public on May 13, 2022
Title Orgo-Seq integrates single-cell and bulk transcriptomic data to identify cell type specific-driver genes associated with autism spectrum disorder
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary To investigate the cell types and driver genes perturbed by 16p11.2 deletions using cerebral organoids
 
Overall design We performed RNA sequencing on cerebral organoids differentiated from 9 donors with 16p11.2 deletions versus 12 control donors.
 
Contributor(s) Lim E
Citation(s) 35688811
BioProject PRJNA824347
Submission date Apr 14, 2022
Last update date Jun 27, 2022
Contact name Elaine Lim
Organization name UMass Chan Medical School
Street address 366 Plantation Street, N5-1025
City Worcester
State/province MA
ZIP/Postal code 01605
Country USA
 
Platforms (1)
GPL20795 HiSeq X Ten (Homo sapiens)
Samples (71)
GSM6045385 Cerebral organoid cells, Donor 1 Replicate 1, Day 46
GSM6045386 Cerebral organoid cells, Donor 1 Replicate 2, Day 46
GSM6045387 Cerebral organoid cells, Donor 1 Replicate 3, Day 46

Download family Format
SOFT formatted family file(s) SOFTHelp
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Supplementary file Size Download File type/resource
GSE200851_15q.xlsx 11.5 Mb (ftp)(http) XLSX
GSE200851_16p11_SetA.xlsx 15.3 Mb (ftp)(http) XLSX
GSE200851_16p11_SetD.xlsx 6.9 Mb (ftp)(http) XLSX
GSE200851_16p11_SetP.xlsx 12.1 Mb (ftp)(http) XLSX
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Raw data are available in SRA
Processed data are available on Series record

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