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Status |
Public on May 13, 2022 |
Title |
Cerebral organoid cells, Donor 19 Replicate 2, Day 46 |
Sample type |
SRA |
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Source name |
Cerebral organoids
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Organism |
Homo sapiens |
Characteristics |
cell type: Cerebral organoids genotype: 16p11.2 deletion
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Extracted molecule |
total RNA |
Extraction protocol |
PureLink RNA Mini Kit TruSeq Stranded Total RNA
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Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
HiSeq X Ten |
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Description |
19_2
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Data processing |
FastQC v0.10.0 Trimmomatic v0.32 TopHat v2.0.13, bowtie2 2.2.3 Cufflinks v2.2.1 STAR 2.4.0f1, GATK 3.3-0
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Submission date |
Apr 14, 2022 |
Last update date |
May 13, 2022 |
Contact name |
Elaine Lim |
Organization name |
UMass Chan Medical School
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Street address |
366 Plantation Street, N5-1025
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City |
Worcester |
State/province |
MA |
ZIP/Postal code |
01605 |
Country |
USA |
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Platform ID |
GPL20795 |
Series (1) |
GSE200851 |
Orgo-Seq integrates single-cell and bulk transcriptomic data to identify cell type specific-driver genes associated with autism spectrum disorder |
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Relations |
BioSample |
SAMN27401746 |
SRA |
SRX14777680 |
Supplementary data files not provided |
SRA Run Selector![Help](/coreweb/images/long_help4.gif) |
Raw data are available in SRA |
Processed data are available on Series record |
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