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GEO accession:
Sample GSM60915
Query DataSets for GSM60915
Status
Public on Jun 14, 2005
Title
control virus-infected replicate 1 (MCF7)
Sample type
RNA
Source name
MCF7 cells
Organism
Homo sapiens
Characteristics
Mammary cell line
Extracted molecule
total RNA
Extraction protocol
Approximately 1x10^6 cells were infected with control adenovirus expressing GFP for 16 hours, then total RNA was isolated using RNEasy kit (Qiagen).
Label
biotin
Label protocol
Approximately 1 µg of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol
standard Affymetrix procedures
Scan protocol
standard Affymetrix procedures
Description
Adenovirus-infected MCF7 cells
Data processing
Affymetrix Microarray Suite version 5.0
Submission date
Jun 14, 2005
Last update date
Jun 14, 2005
Contact name
Scott A. Ness
E-mail(s)
sness@salud.unm.edu
Phone
505-272-9883
Organization name
U. of New Mexico HSC
Department
Internal Medicine
Lab
Ness
Street address
MSC07 4025 - CRF 121
City
Albuquerque
State/province
NM
ZIP/Postal code
87131-0001
Country
USA
Platform ID
GPL96
Series (1)
GSE2815
cMyb and vMyb in MCF7 cells
Data table header descriptions
ID_REF
VALUE
MAS5-calculated Signal intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
2560.7
P
0.000258
AFFX-BioB-M_at
5244.3
P
0.000044
AFFX-BioB-3_at
3227.1
P
0.000044
AFFX-BioC-5_at
6784.5
P
0.000052
AFFX-BioC-3_at
5741.8
P
0.000044
AFFX-BioDn-5_at
6023.1
P
0.00006
AFFX-BioDn-3_at
35323.8
P
0.000052
AFFX-CreX-5_at
65170
P
0.000044
AFFX-CreX-3_at
96298.5
P
0.000044
AFFX-DapX-5_at
4.8
A
0.969024
AFFX-DapX-M_at
37
A
0.686277
AFFX-DapX-3_at
20.5
A
0.953518
AFFX-LysX-5_at
9.3
A
0.9273
AFFX-LysX-M_at
19.5
A
0.883887
AFFX-LysX-3_at
54.2
A
0.48511
AFFX-PheX-5_at
4.9
A
0.963431
AFFX-PheX-M_at
14.5
A
0.973889
AFFX-PheX-3_at
272.1
A
0.327079
AFFX-ThrX-5_at
28.9
A
0.760937
AFFX-ThrX-M_at
100.1
A
0.574038
Total number of rows:
22283
Table truncated, full table size
594 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM60915.CEL.gz
3.1 Mb
(ftp)
(http)
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