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Sample GSM61 Query DataSets for GSM61
Status Public on Nov 09, 2001
Title 222B-HUSKS
Sample type RNA
 
Channel 1
Source name 4 day old shoot
Organism Zea mays
Extracted molecule total RNA
 
Channel 2
Source name Husks
Organism Zea mays
Extracted molecule total RNA
 
 
Description One of duplicate hybridizations.
 
Submission date Jun 12, 2001
Last update date May 27, 2005
Contact name Yangrae Cho
E-mail(s) yacho@sequence.stanford.edu
Phone 650-812-1976
Fax 650-812-1975
Organization name Stanford University
Department Biological Sciences
Lab V. Walbot
Street address 385 Serra Mall
City Stanford University
State/province CA
ZIP/Postal code 94305-8221
Country USA
 
Platform ID GPL12
Series (1)
GSE141 Gene-expression profile comparisons distinguish seven organs of maize

Data table header descriptions
ID_REF
Dia. Feature size
F635 Median Arithmetic median from channel 1
F635 Mean Arithmetic mean calculated as the raw signal divided by the surface area
F635 SD Standard deviation calculated from the mean signal (Channel 1)
B635 Median Arithmetic median of background from channel 1
B635 Mean Arithmetic mean of background (channel 1)
B635 SD Background standard deviation calculated for the mean background signal (channel 1)
F532 Median Arithmetic median from channel 2
F532 Mean Arithmetic mean calculated as the raw signal divided by the surface area (channel 2)
F532 SD Standard deviation calculated from the mean signal (Channel 2)
B532 Median Arithmetic median of background from channel 2
B532 Mean Arithmetic mean of background (channel 2)
B532 SD Background standard deviation calculated for the mean background signal (channel 2)
Rgn Rē Regression root square
F Pixels Area for intensity measurement of a feature
B Pixels Area for background intensity measurement
Flags crude quality:(-)value=bad flagged
VALUE log ratio of PRE_VALUE
PRE_VALUE The calculated ratio between (mean intensity of channel 1-median background)/(mean intensity of ch 2-median background of ch2)

Data table
ID_REF Dia. F635 Median F635 Mean F635 SD B635 Median B635 Mean B635 SD F532 Median F532 Mean F532 SD B532 Median B532 Mean B532 SD Rgn Rē F Pixels B Pixels Flags VALUE PRE_VALUE
707001A02.x1 140 17466 17857 6430 101 111 80 11634 11581 4359 133 141 52 0.951 156 918 0 0.1906123 1.551
707002E03.y1 120 13551 13799 4037 94 100 29 6921 6798 2099 131 136 39 0.954 120 620 0 0.3130233 2.056
707002G11.y1 130 2427 3042 2179 92 100 38 1796 2098 1251 133 141 50 0.94 120 726 0 0.1763813 1.501
707003H06.x3 130 12842 12891 3487 95 102 43 7432 7519 1634 137 143 54 0.945 120 724 0 0.2387993 1.733
707004B03.y1 140 3733 4124 1943 97 106 47 3138 3296 1356 137 144 59 0.932 156 815 0 0.1055103 1.275
707004G10.x1 130 20619 22806 7584 107 229 1046 17661 18109 5009 150 184 314 0.951 120 722 0 0.1017473 1.264
707001A04.x1 120 11238 10859 2771 104 230 1116 17806 16937 5174 146 182 333 0.92 120 634 0 -0.1931423 0.641
707002E04.y1 140 23174 22356 9077 95 103 56 17366 16737 6722 135 142 53 0.95 156 828 0 0.1274293 1.341
707003C01.x3 130 31862 32641 10449 92 108 105 8630 8521 1878 129 140 75 0.919 120 708 0 0.5887203 3.879
707003H07.x2 120 3302 3604 2063 89 107 124 3867 3979 1234 132 138 56 0.861 120 652 0 -0.0390543 0.914
707004H03.x2 130 21065 21776 7014 90 114 228 21656 21324 6235 133 143 71 0.95 120 756 0 0.0098763 1.023
707004A11.x2 130 15048 15602 4344 88 111 228 10147 10256 2787 132 141 69 0.951 120 709 0 0.1852593 1.532
707001C09.x1 130 3310 3750 2226 86 110 173 2522 2695 1452 129 136 61 0.901 120 727 0 0.1547283 1.428
707002B05.y1 130 5079 5346 2143 84 118 206 6508 6411 1182 129 141 82 0.887 120 757 0 -0.0767563 0.838
707003C02.x2 120 8176 8316 2509 83 99 129 13880 14305 4529 130 136 63 0.907 120 666 0 -0.2358243 0.581
707003H08.x4 130 1804 2493 2453 82 86 21 2959 3201 1444 127 130 28 0.739 120 740 0 -0.1056843 0.784
707004G04.x2 130 7378 7344 2236 83 113 258 7785 7660 1713 128 139 118 0.927 120 726 0 -0.0159233 0.964
707004D11.y1 130 6630 6509 1737 84 136 374 6113 6056 1021 124 139 144 0.946 120 741 0 0.0346283 1.083
707001E11.x1 140 14951 14908 4760 83 111 262 14919 14954 4925 125 134 89 0.951 156 833 0 0.0000003 1.000
707002F05.y1 140 14408 13486 4270 83 87 22 10099 9670 3019 125 128 26 0.95 156 914 0 0.1473673 1.404

Total number of rows: 5760

Table truncated, full table size 545 Kbytes.




Supplementary data files not provided
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