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Sample GSM616 Query DataSets for GSM616
Status Public on Dec 17, 2001
Title Large Pre-BII cells 1
Sample type RNA
 
Source name Large Pre-BII cells
Organism Mus musculus
Extracted molecule total RNA
 
Description B220+CD25+sIg- Large Pre BII cells sorted out of mouse bone marrow, sort no. 1
 
Submission date Nov 27, 2001
Last update date May 27, 2005
Contact name Reinhard Hoffmann
E-mail(s) reinhard.hoffmann@lrz.tum.de
Phone +49-89-4140-4155
Organization name Institute for medical microbiology
Street address Trogerstr. 30
City Munich
ZIP/Postal code 81675
Country Germany
 
Platform ID GPL75
Series (2)
GSE13 Murine bone marrow B cell precursors
GSE272 T and B lymphocyte development profiles

Data table header descriptions
ID_REF Affymetrix probe set identifier
Experiment Name Experiment name
POSITIVE Number of positive probe pairs
NEGATIVE Number of negative probe pairs
PAIRS Number of probe set specific probe pairs on the array
PAIRS_USED Pairs used
PAIRS_IN_AVG Trimmed probe pair set
POS_FRACTION Positive/pairs used
Log Avg Log average
PM Excess Number of probe pairs where PM/MM exceeds the ratio limit (10 by default)
MM Excess Number of probe pairs where MM/PM exceeds 1/ratio limit (10 by default)
POS/NEG Positive/negative
VALUE Average difference intensity
ABS_CALL Whether a probe set is present, marginal, or absent; see Affymetrix Literature

Data table
ID_REF Experiment Name POSITIVE NEGATIVE PAIRS PAIRS_USED PAIRS_IN_AVG POS_FRACTION Log Avg PM Excess MM Excess POS/NEG VALUE ABS_CALL
IL2_at RHMu1LarA 3 2 19 19 18 0.16 -0.2 0 0 1.5 -47 A
IL10_at RHMu1LarA 2 5 20 20 19 0.1 -0.1 0 0 0.4 -14 A
GMCSF_at RHMu1LarA 3 3 20 20 19 0.15 -0.04 0 0 1 -131 A
TNFRII_at RHMu1LarA 1 1 20 20 18 0.05 -0.45 0 0 1 -48 A
MIP1-B_at RHMu1LarA 4 3 20 20 19 0.2 -0.11 0 0 1.3 176 A
IL4_at RHMu1LarA 0 3 20 20 19 0 0.35 0 0 0 15 A
IL12_P40_at RHMu1LarA 1 5 20 20 19 0.05 -0.36 0 0 0.2 -163 A
TNFa_at RHMu1LarA 0 0 20 20 19 0 -0.04 0 0 Undef -15 A
TCRa_at RHMu1LarA 1 2 20 20 20 0.05 -0.12 0 0 0.5 -106 A
AFFX-BioB-5_at RHMu1LarA 5 4 20 20 19 0.25 0.75 0 0 1.3 47 A
AFFX-BioB-M_at RHMu1LarA 2 4 20 20 19 0.1 0.08 0 0 0.5 -77 A
AFFX-BioB-3_at RHMu1LarA 4 5 20 20 20 0.2 -0.01 0 0 0.8 -3 A
AFFX-BioC-5_at RHMu1LarA 6 1 20 20 20 0.3 0.9 0 0 6 271 A
AFFX-BioC-3_at RHMu1LarA 3 0 20 20 19 0.15 0.58 0 0 Undef 144 A
AFFX-BioDn-5_at RHMu1LarA 4 0 20 20 20 0.2 0.66 0 0 Undef 212 A
AFFX-BioDn-3_at RHMu1LarA 10 1 20 20 19 0.5 1.82 0 0 10 2042 P
AFFX-CreX-5_at RHMu1LarA 19 0 20 20 19 0.95 4.39 0 0 Undef 2887 P
AFFX-CreX-3_at RHMu1LarA 18 0 20 20 20 0.9 5.3 1 0 Undef 5633 P
AFFX-BioB-5_st RHMu1LarA 5 4 20 20 19 0.25 0.48 0 1 1.3 164 A
AFFX-BioB-M_st RHMu1LarA 3 7 20 20 19 0.15 -0.16 0 0 0.4 -148 A

Total number of rows: 6584

Table truncated, full table size 381 Kbytes.




Supplementary data files not provided
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