|
| Status |
Public on Oct 12, 2022 |
| Title |
RNA-seq of adult Octopus bimaculoides testis [Obi_Testis_H] |
| Sample type |
SRA |
| |
|
| Source name |
Adult testis
|
| Organism |
Octopus bimaculoides |
| Characteristics |
tissue: Testis
genome build: PRJNA270931
gtf: PRJNA270931 enriched GTF
|
| Extracted molecule |
polyA RNA |
| Extraction protocol |
N/A
polyA-selected stranded RNA-seq; RNA libraries were prepared for sequencing using standard Illumina protocols
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NovaSeq 6000 |
| |
|
| Description |
Testis from an adult individual
|
| Data processing |
Estimated counts and TPMs were computed by Kallisto (v0.44.0)
Supplementary files format and content: Tab-delimited file with length, effective length, estimated counts and transcript per million (TPM) for all species protein coding genes in the relative GTF
|
| |
|
| Submission date |
Jun 05, 2022 |
| Last update date |
Oct 12, 2022 |
| Contact name |
Federica Mantica |
| E-mail(s) |
federica.mantica93@gmail.com
|
| Organization name |
CRG
|
| Street address |
Dr. Aiguader 88
|
| City |
Barcelona |
| ZIP/Postal code |
08003 |
| Country |
Spain |
| |
|
| Platform ID |
GPL32321 |
| Series (1) |
| GSE205498 |
Transcriptomic evolution across bilaterian tissues |
|
| Relations |
| BioSample |
SAMN28868444 |
| SRA |
SRX15600933 |
