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Sample GSM62324 Query DataSets for GSM62324
Status Public on Feb 21, 2006
Title H1395
Sample type genomic
 
Channel 1
Source name H1395 adenocarcinoma cell line
Organism Homo sapiens
Characteristics ATCC catalogue number CRL-5868
Extracted molecule genomic DNA
Label cy5
 
Channel 2
Source name normal male
Organism Homo sapiens
Characteristics NOVAGEN POOLED NORMAL MALE GENOMIC DNA
Extracted molecule genomic DNA
Label cy3
 
 
Description cy 5 = sample
cy 3 = reference
Data processing NONE
 
Submission date Jun 27, 2005
Last update date Feb 21, 2006
Contact name William Wallace Lockwood
E-mail(s) william.lockwood@nih.gov
Organization name National Human Genome Research Institute
Street address 50 South Drive
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL2043
Series (1)
GSE2922 High resolution analysis of non-small cell lung cancer cell lines by whole genome tiling path array CGH

Data table header descriptions
ID_REF
Spot Mean Intensity (w595) Mean Spot Pixel Intensity - Cy3 channel
Spot Mean Intensity (w685) Mean Spot Pixel Intensity - Cy5 channel
Background Median Intensity (w595) Median Background Pixel Intensity - Cy3 channel
Background Median Intensity (w685) Median Background Pixel Intensity - Cy5 channel
Spot Normalized Intensity (w595) Spot Mean - Background Median
Spot Normalized Intensity (w685) Spot Mean - Background Median
Spot SNR (w595) Signal to noise ratio - Cy3
Spot SNR (w685) Signal to noise ratio - Cy5
Spot Ratio (w595) Cy3/Cy5
Spot Ratio (w685) Cy5/Cy3
Spot Log2 Ratio (w595) log2(Cy3/Cy5) (global mean set to "0")
VALUE log2(Cy5/Cy3) (global mean set to "0")

Data table
ID_REF Spot Mean Intensity (w595) Spot Mean Intensity (w685) Background Median Intensity (w595) Background Median Intensity (w685) Spot Normalized Intensity (w595) Spot Normalized Intensity (w685) Spot SNR (w595) Spot SNR (w685) Spot Ratio (w595) Spot Ratio (w685) Spot Log2 Ratio (w595) VALUE
1 23406.79 12279.42 2720.5 3028.5 20686.29 9250.92 42.5561 10.84476 1.004726 0.9952939 0.006802617 -0.006805511
2 19417.76 10861.08 2816 3120 16601.76 7741.08 60.6383 6.63051 0.9636121 1.03776 -0.05347556 0.05347267
3 28946.17 17164.22 2720 3071 26226.17 14093.22 114.5625 156.0463 0.8361314 1.195982 -0.2581985 0.2581956
4 22896.44 14240.05 1429 2735 21467.44 11505.05 35.1292 67.6098 0.8383814 1.192772 -0.2543215 0.2543186
5 18181.05 10191.82 1247 2642.5 16934.05 7549.32 243.7124 112.0504 1.007866 0.9921933 0.01130396 -0.01130685
6 26465.09 17283.61 1259 2652 25206.09 14631.61 145.8012 58.0566 0.7740395 1.291921 -0.3695209 0.369518
7 32426.9 21333.27 1307 2680.5 31119.92 18652.77 217.151 128.291 0.7496266 1.333995 -0.4157559 0.415753
8 20422.87 15180.36 1279.5 2674 19143.37 12506.36 190.696 188.8801 0.6877607 1.453991 -0.5400214 0.5400185
9 19234.48 8884.93 1250 2636 17984.48 6248.93 250.7342 64.3564 1.29313 0.7733161 0.3708668 -0.3708697
10 23773.12 18924.82 1289 2684 22484.12 16240.82 346.544 236.6955 0.6220394 1.607612 -0.6849222 0.6849193
11 22037.92 12087.69 1315 2684 20722.92 9403.69 149.2457 52.3046 0.9901531 1.009943 -0.01427645 0.01427355
12 21729.63 9526.77 1321 2637.5 20408.63 6889.27 156.6612 45.4434 1.331039 0.7512915 0.4125524 -0.4125553
13 30461.37 16502.16 1316.5 2645 29144.87 13857.16 214.3427 128.3549 0.9450132 1.058184 -0.08159369 0.0815908
14 21428.93 12919.49 1293 2640 20135.93 10279.49 206.7266 175.3796 0.880136 1.136186 -0.1842017 0.1841988
15 26272.64 12204.46 1272.5 2625 25000.14 9579.46 433.848 192.9202 1.172604 0.8528013 0.2297156 -0.2297185
16 15761.35 8019.13 1290 2630 14471.35 5389.13 294.5241 123.9874 1.206535 0.8288179 0.27087 -0.2708729
17 22128.76 11947.06 1248 2595 20880.76 9352.06 334.551 193.2971 1.003203 0.9968053 0.004613457 -0.004616352
18 34874.5 19274.48 1289 2642.5 33585.5 16631.98 707.274 372.279 0.9073156 1.10215 -0.1403237 0.1403208
19 17190.11 8985.35 1382 2679 15808.11 6306.35 62.3606 71.0525 1.126293 0.8878666 0.1715823 -0.1715852
20 26639.95 17920.89 1594 2744 25045.95 15176.89 82.8727 119.2585 0.7414887 1.348636 -0.4315034 0.4315005

Total number of rows: 104544

Table truncated, full table size 11031 Kbytes.




Supplementary data files not provided
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