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Sample GSM62329 Query DataSets for GSM62329
Status Public on Feb 21, 2006
Title H2087
Sample type genomic
 
Channel 1
Source name H2087 adenocarcinoma cell line
Organism Homo sapiens
Characteristics ATTC catalogue number CRL-5922
Extracted molecule genomic DNA
Label cy5
 
Channel 2
Source name normal male
Organism Homo sapiens
Characteristics NOVAGEN POOLED NORMAL MALE REFERENCE GENOMIC DNA
Extracted molecule genomic DNA
Label cy3
 
 
Description cy 5 = sample cy 3= reference
Data processing NONE
 
Submission date Jun 27, 2005
Last update date Feb 21, 2006
Contact name William Wallace Lockwood
E-mail(s) william.lockwood@nih.gov
Organization name National Human Genome Research Institute
Street address 50 South Drive
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL2043
Series (1)
GSE2922 High resolution analysis of non-small cell lung cancer cell lines by whole genome tiling path array CGH

Data table header descriptions
ID_REF
Spot Mean Intensity (w595) Mean Spot Pixel Intensity - Cy3 channel
Spot Mean Intensity (w685) Mean Spot Pixel Intensity - Cy5 channel
Background Median Intensity (w595) Median Background Pixel Intensity - Cy3 channel
Background Median Intensity (w685) Median Background Pixel Intensity - Cy5 channel
Spot Normalized Intensity (w595) Spot Mean - Background Median
Spot Normalized Intensity (w685) Spot Mean - Background Median
Spot SNR (w595) Signal to noise ratio - Cy3
Spot SNR (w685) Signal to noise ratio - Cy5
Spot Ratio (w595) Cy3/Cy5
Spot Ratio (w685) Cy3/Cy5
Spot Log2 Ratio (w595) log2(Cy3/Cy5) (global mean set to "0")
VALUE log2(Cy5/Cy3) (global mean set to "0")

Data table
ID_REF Spot Mean Intensity (w595) Spot Mean Intensity (w685) Background Median Intensity (w595) Background Median Intensity (w685) Spot Normalized Intensity (w595) Spot Normalized Intensity (w685) Spot SNR (w595) Spot SNR (w685) Spot Ratio (w595) Spot Ratio (w685) Spot Log2 Ratio (w595) VALUE
1 10178.65 4710.59 1184.5 2410 8994.15 2300.588 89.7188 57.2065 1.300848 0.7687187 0.3794524 -0.3794723
2 8221.45 4136.79 1330 2438 6891.45 1698.791 109.3068 47.0005 1.349822 0.7408283 0.4327689 -0.4327888
3 15231.04 6786.88 1275 2414 13956.04 4372.88 174.609 126.852 1.06194 0.9416596 0.08670252 -0.08672241
4 11367.32 5550.39 1165.5 2388 10201.82 3162.39 126.9594 95.0403 1.073415 0.9315935 0.1022076 -0.1022275
5 10124.85 5019.84 1121 2382 9003.85 2637.841 154.5086 75.7851 1.135756 0.8804583 0.1836535 -0.1836734
6 15792.06 6167.84 1124 2399 14668.06 3768.84 308.4397 112.6073 1.295001 0.7721895 0.3729531 -0.372973
7 13091.35 5859.9 1152 2385 11939.35 3474.9 261.5956 103.5417 1.143257 0.8746823 0.1931491 -0.193169
8 10603.4 5806.04 1117 2379.5 9486.4 3426.54 268.5396 104.7071 0.9211948 1.085532 -0.1184219 0.118402
9 10702.98 5296.6 1119.5 2415.5 9583.48 2881.098 302.0628 91.8435 1.106804 0.9034903 0.1463991 -0.146419
10 8130.2 4373.07 1076.5 2394 7053.7 1979.072 177.8684 60.4941 1.185935 0.8432045 0.2460256 -0.2460455
11 13440.12 5382.36 1079 2416.5 12361.12 2965.861 262.5429 78.9749 1.386796 0.7210768 0.4717551 -0.471775
12 13414.22 5384.94 1106 2422.5 12308.22 2962.439 212.2513 68.128 1.382456 0.7233404 0.4672335 -0.4672534
13 19996.88 6935.43 1127 2418 18869.88 4517.43 441.106 97.78 1.389898 0.7194674 0.474979 -0.4749989
14 12811.74 6486.69 1093.5 2415 11718.24 4071.69 207.8195 94.3525 0.9576203 1.044241 -0.06247432 0.06245443
15 16020.58 6518.34 1089 2404.5 14931.58 4113.84 186.2448 97.6492 1.207713 0.8279997 0.272278 -0.2722979
16 10131.52 5083.61 1096 2381 9035.52 2702.61 102.3559 60.0643 1.112437 0.8989148 0.1537238 -0.1537437
17 4946.39 4012.7 1085.5 2412.5 3860.89 1600.195 86.0288 47.0182 0.8028233 1.245587 -0.3168456 0.3168257
18 27500.51 13713.66 1124 2435 26376.51 11278.66 564.255 279.9022 0.7781537 1.285075 -0.361873 0.3618531
19 11316.94 7447.05 1098 2414 10218.94 5033.05 206.692 131.2685 0.6755852 1.480178 -0.5657902 0.5657703
20 20588.7 9062.45 1121 2424 19467.7 6638.45 110.9542 96.99 0.9757841 1.024803 -0.03536624 0.03534636

Total number of rows: 104544

Table truncated, full table size 11021 Kbytes.




Supplementary data files not provided
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