|
| Status |
Public on May 23, 2023 |
| Title |
MDA-B6-M, T0, Pre, TIC, Rep1 |
| Sample type |
genomic |
| |
|
| Source name |
Breast
|
| Organism |
Homo sapiens |
| Characteristics |
cell line: MDA-MB-231
treatment: stably transfected with pcDNA3 expression vector encoding Myc-tagged EPHB6
timepoint: T0
|
| Treatment protocol |
cell were treated as described in the manuscript Hanover et al.
|
| Growth protocol |
Cells were collected as describled in the manuscript Hanover et al.
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
genomic DNA was extracted as described in Blakely et al. Methods in Molecular Biology. 2011 PMID: 2187728
|
| Label |
biotin
|
| Label protocol |
labeling was done as described in Blakely et al. Methods in Molecular Biology. 2011 PMID: 2187728
|
| |
|
| Hybridization protocol |
hybing was done as described in Blakely et al. Methods in Molecular Biology. 2011 PMID: 2187728
|
| Scan protocol |
scanning was done as described in Blakely et al. Methods in Molecular Biology. 2011 PMID: 2187728
|
| Description |
T0 Timepoint Replicate 1
|
| Data processing |
The raw intensity data extracted from the CEL files were normalized and log transformed.
|
| |
|
| Submission date |
Jun 27, 2022 |
| Last update date |
May 23, 2023 |
| Contact name |
Franco J Vizeacoumar |
| E-mail(s) |
franco.vizeacoumar@usask.ca
|
| Phone |
306-966-7010
|
| Organization name |
University of Saskatchewan
|
| Department |
Oncology
|
| Lab |
Vizeacoumar Lab
|
| Street address |
4D40 Health Sciences Building, 107 Wiggins Road
|
| City |
Saskatoon |
| State/province |
Saskatchewan |
| ZIP/Postal code |
S7N 5E5 |
| Country |
Canada |
| |
|
| Platform ID |
GPL32266 |
| Series (1) |
| GSE206981 |
Integration of cancer-related genetic landscape of Eph receptors and ephrins with proteomics identifies a crosstalk between EPHB6 and EGFR |
|
