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Sample GSM62969 Query DataSets for GSM62969
Status Public on Feb 21, 2006
Title HCC95
Sample type genomic
 
Channel 1
Source name HCC95 Squamous Cell Carcinoma Cell Line
Organism Homo sapiens
Characteristics HCC95 Squamous Cell Carcinoma Cell Line
Extracted molecule genomic DNA
Label Cyanine 5
 
Channel 2
Source name Male genomic
Organism Homo sapiens
Characteristics NOVAGEN POOLED MALE REFERENCE GENOMIC DNA
Extracted molecule genomic DNA
Label cyanine 3
 
 
Description cyanine 5 = sample
cyanine 3 = reference
Data processing N/A
 
Submission date Jul 04, 2005
Last update date Feb 21, 2006
Contact name William Wallace Lockwood
E-mail(s) william.lockwood@nih.gov
Organization name National Human Genome Research Institute
Street address 50 South Drive
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL2043
Series (1)
GSE2922 High resolution analysis of non-small cell lung cancer cell lines by whole genome tiling path array CGH

Data table header descriptions
ID_REF
Spot Mean Intensity (w595) Mean Spot Pixel Intensity - Cy3 channel
Spot Mean Intensity (w685) Mean Spot Pixel Intensity - Cy5 channel
Background Median Intensity (w595) Median Background Pixel Intensity - Cy3 channel
Background Median Intensity (w685) Median Background Pixel Intensity - Cy5 channel
Spot Normalized Intensity (w595) Spot Mean - Background Median
Spot Normalized Intensity (w685) Spot Mean - Background Median
Spot SNR (w595) Signal to noise ratio - Cy3
Spot SNR (w685) Signal to noise ratio - Cy5
Spot Ratio (w595) Cy3/Cy5
Spot Ratio (w685) Cy5/Cy3
Spot Log2 Ratio (w595) log2(Cy3/Cy5) (global mean set to "0")
VALUE log2(Cy5/Cy3) (global mean set to "0")

Data table
ID_REF Spot Mean Intensity (w595) Spot Mean Intensity (w685) Background Median Intensity (w595) Background Median Intensity (w685) Spot Normalized Intensity (w595) Spot Normalized Intensity (w685) Spot SNR (w595) Spot SNR (w685) Spot Ratio (w595) Spot Ratio (w685) Spot Log2 Ratio (w595) VALUE
1 9165.68 6321.83 1662 2912 7503.68 3409.83 79.1106 54.3485 0.9107254 1.097974 -0.1349121 0.1348436
2 8752.28 4789.69 1720.5 2853.5 7031.78 1936.188 55.925 18.56033 1.503019 0.665296 0.5878633 -0.5879318
3 12561.47 6253.38 1749.5 2863 10811.97 3390.38 88.5579 30.70143 1.319784 0.7576635 0.4003022 -0.4003707
4 8872.19 6724.29 1744 2893 7128.19 3831.29 56.0924 61.2417 0.7699817 1.29867 -0.3771039 0.3770354
5 10041.1 5641.67 1691 2854 8350.1 2787.667 59.0178 36.9197 1.239646 0.8066437 0.309928 -0.3099965
6 11634.89 6933.89 1522 2832 10112.89 4101.89 67.7292 47.9844 1.020323 0.980035 0.02902634 -0.0290948
7 6991.44 5054.53 1602 2940 5389.44 2114.534 46.3415 27.6784 1.054814 0.9479898 0.07698817 -0.07705663
8 7908.59 6539.79 1682 2992 6226.59 3547.79 114.8119 62.664 0.7263381 1.376704 -0.4612869 0.4612184
9 7688.25 8188.01 1590 2970.5 6098.25 5217.51 82.9373 84.5966 0.483714 2.067239 -1.047774 1.047705
10 6151.5 5316.2 1519 2923.5 4632.5 2392.698 90.3599 35.4657 0.8012619 1.247972 -0.3196542 0.3195857
11 7241.14 5778.66 1484 2893 5757.14 2885.66 102.1263 29.85892 0.8256725 1.211076 -0.2763584 0.2762899
12 8346.88 5432.27 1494.5 2827.5 6852.38 2604.765 114.8929 55.2978 1.088728 0.9184597 0.1226432 -0.1227116
13 11550.39 5828.66 1603 2846 9947.39 2982.664 64.3178 30.18008 1.38023 0.7244827 0.4649084 -0.4649769
14 13050.86 8472.83 1799.5 2854 11251.36 5618.83 60.6446 38.3495 0.8287154 1.20663 -0.2710512 0.2709827
15 10777.35 6922.61 1820.5 2895 8956.85 4027.61 58.1604 36.472 0.920352 1.086489 -0.1197422 0.1196737
16 13126.66 6971.21 1755.5 2813.5 11371.16 4157.71 95.0136 46.7889 1.131871 0.8834506 0.1787102 -0.1787786
17 12509.53 7659.3 1691 2851 10818.53 4808.3 89.5736 55.7712 0.9311569 1.073882 -0.1029038 0.1028353
18 12974.67 9941.78 1519 2906 11455.67 7035.78 124.8913 72.8369 0.6738372 1.483968 -0.569528 0.5694595
19 8584.59 5682.38 1557 3013 7027.59 2669.381 125.1755 28.03596 1.089538 0.9177765 0.1237168 -0.1237852
20 8477.34 5716.46 1487 2977 6990.34 2739.457 106.804 34.0134 1.05604 0.9468886 0.07866497 -0.07873343

Total number of rows: 104544

Table truncated, full table size 11005 Kbytes.




Supplementary data files not provided
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