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Sample GSM62971 Query DataSets for GSM62971
Status Public on Feb 21, 2006
Title SK-MES-1
Sample type genomic
 
Channel 1
Source name SK-MES-1 Squamous Cell Carcinoma Cell Line
Organism Homo sapiens
Characteristics ATCC Catalouge Number HTB-58
Extracted molecule genomic DNA
Label Cyanine 5
 
Channel 2
Source name Male genomic
Organism Homo sapiens
Characteristics NOVAGEN POOLED MALE REFERENCE GENOMIC DNA
Extracted molecule genomic DNA
Label cyanine 3
 
 
Description cyanine 5 = sample
cyanine 3 = reference
Data processing N/A
 
Submission date Jul 04, 2005
Last update date Feb 21, 2006
Contact name William Wallace Lockwood
E-mail(s) william.lockwood@nih.gov
Organization name National Human Genome Research Institute
Street address 50 South Drive
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL2043
Series (1)
GSE2922 High resolution analysis of non-small cell lung cancer cell lines by whole genome tiling path array CGH

Data table header descriptions
ID_REF
Spot Mean Intensity (w595) Mean Spot Pixel Intensity - Cy3 channel
Spot Mean Intensity (w685) Mean Spot Pixel Intensity - Cy5 channel
Background Median Intensity (w595) Median Background Pixel Intensity - Cy3 channel
Background Median Intensity (w685) Median Background Pixel Intensity - Cy5 channel
Spot Normalized Intensity (w595) Spot Mean - Background Median
Spot Normalized Intensity (w685) Spot Mean - Background Median
Spot SNR (w595) Signal to noise ratio - Cy3
Spot SNR (w685) Signal to noise ratio - Cy5
Spot Ratio (w595) Cy3/Cy5
Spot Ratio (w685) Cy5/Cy3
Spot Log2 Ratio (w595) log2(Cy3/Cy5) (global mean set to "0")
VALUE log2(Cy5/Cy3) (global mean set to "0")

Data table
ID_REF Spot Mean Intensity (w595) Spot Mean Intensity (w685) Background Median Intensity (w595) Background Median Intensity (w685) Spot Normalized Intensity (w595) Spot Normalized Intensity (w685) Spot SNR (w595) Spot SNR (w685) Spot Ratio (w595) Spot Ratio (w685) Spot Log2 Ratio (w595) VALUE
1 12932.13 7263.5 3800 3874.5 9132.13 3389 67.9649 47.7532 1.324387 0.7550408 0.4053244 -0.4053735
2 10633.51 6130.62 3979 3906 6654.51 2224.621 4.90165 14.86144 1.470192 0.6801603 0.5560044 -0.5560534
3 22474.88 8289.67 8303 4582 14171.88 3707.67 0.1764766 0.9866112 1.878626 0.5322857 0.9096781 -0.9097271
4 43693.7 11769.73 37641 8656 6052.7 3113.731 1.088038 2.130419 0.9553924 1.046655 -0.06583466 0.06578563
5 40007.4 10038.43 35450 8279 4557.38 1759.429 0.8774368 0.2268531 1.273087 0.7854658 0.3483306 -0.3483796
6 29106.6 9330.15 33476 7775 -4369.4 1555.146 0.327953 1.024169 0 0 0 0
7 15933.18 8050.65 4591 3995.5 11342.18 4055.15 0.5208535 2.427908 1.374688 0.7274129 0.4591045 -0.4591535
8 10370.23 7133.4 4017 3910.5 6353.23 3222.9 22.89844 57.3343 0.9688614 1.032104 -0.0456378 0.04558878
9 10415.54 6882.34 3972 3866 6443.54 3016.341 44.5098 57.3969 1.049925 0.9524167 0.07028614 -0.07033516
10 14229.21 7916 4143 3906 10086.21 4010 85.5395 61.3146 1.236225 0.8088867 0.3059414 -0.3059905
11 11426.99 6852.11 4178 3953 7248.99 2899.108 74.472 48.0721 1.22893 0.8136885 0.2974025 -0.2974515
12 11540.93 7386.28 4103 3903 7437.93 3483.28 54.3259 48.172 1.049489 0.952812 0.06968747 -0.0697365
13 13603.92 7836.56 3905 3875 9698.92 3961.56 75.4244 89.2275 1.203292 0.8310254 0.2669865 -0.2670355
14 10297.53 7088.59 3590 3850 6707.53 3238.59 52.8265 59.5627 1.017937 0.9823461 0.02564774 -0.02569677
15 11370.68 7266.63 3483.5 3840 7887.18 3426.63 81.545 81.8339 1.131276 0.8839273 0.1779513 -0.1780003
16 9567.89 6107.84 3506 3861 6061.89 2246.839 35.1382 39.6418 1.32602 0.7541108 0.4071024 -0.4071515
17 9687.24 6200.18 3702.5 3878.5 5984.74 2321.681 21.4357 16.0835 1.266943 0.7892748 0.3413514 -0.3414004
18 14171.83 7744.11 3929 3905 10242.83 3839.11 72.2305 64.9761 1.311304 0.7625735 0.3910026 -0.3910517
19 9244.49 5980.67 4058 3926 5186.49 2054.671 46.9992 23.35992 1.240638 0.8060092 0.3110828 -0.3111318
20 12276.46 7481.51 4150 3927.5 8126.46 3554.01 82.5835 46.7964 1.12382 0.8897918 0.1684112 -0.1684603

Total number of rows: 104544

Table truncated, full table size 10890 Kbytes.




Supplementary data files not provided
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