NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM63353 Query DataSets for GSM63353
Status Public on Feb 21, 2006
Title H520
Sample type genomic
 
Channel 1
Source name H520 Squamous Cell Carcinoma Cell Line
Organism Homo sapiens
Characteristics ATCC Catalogue Number HTB182
Extracted molecule genomic DNA
Label Cyanine 5
 
Channel 2
Source name Male genomic
Organism Homo sapiens
Characteristics NOVAGEN POOLED MALE REFERENCE GENOMIC DNA
Extracted molecule genomic DNA
Label cyanine 3
 
 
Description cyanine 5 = sample
cyanine 3 = reference
Data processing N/A
 
Submission date Jul 10, 2005
Last update date Feb 21, 2006
Contact name William Wallace Lockwood
E-mail(s) william.lockwood@nih.gov
Organization name National Human Genome Research Institute
Street address 50 South Drive
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL2043
Series (1)
GSE2922 High resolution analysis of non-small cell lung cancer cell lines by whole genome tiling path array CGH

Data table header descriptions
ID_REF
Spot Mean Intensity (w595) Mean Spot Pixel Intensity - Cy3 channel
Spot Mean Intensity (w685) Mean Spot Pixel Intensity - Cy5 channel
Background Median Intensity (w595) Median Background Pixel Intensity - Cy3 channel
Background Median Intensity (w685) Median Background Pixel Intensity - Cy5 channel
Spot Normalized Intensity (w595) Spot Mean - Background Median
Spot Normalized Intensity (w685) Spot Mean - Background Median
Spot SNR (w595) Signal to noise ratio - Cy3
Spot SNR (w685) Signal to noise ratio - Cy5 Signal to noise ratio - Cy5
Spot Ratio (w595) Cy3/Cy5
Spot Ratio (w685) Cy5/Cy3
Spot Log2 Ratio (w595) log2(Cy3/Cy5) (global mean set to "0")
VALUE log2(Cy5/Cy3) (global mean set to "0")

Data table
ID_REF Spot Mean Intensity (w595) Spot Mean Intensity (w685) Background Median Intensity (w595) Background Median Intensity (w685) Spot Normalized Intensity (w595) Spot Normalized Intensity (w685) Spot SNR (w595) Spot SNR (w685) Spot Ratio (w595) Spot Ratio (w685) Spot Log2 Ratio (w595) VALUE
1 28147.49 33483.9 2123 5839 26024.49 27644.91 54.5161 122.6477 0.932171 1.072708 -0.1013335 0.1012576
2 20431.16 28233.73 2173 6000 18258.16 22233.73 326.975 232.4291 0.8131549 1.229713 -0.2983979 0.2983221
3 31589.52 35666.7 2266.5 6059 29323.02 29607.68 279.0293 354.662 0.9806927 1.019634 -0.02812687 0.02805098
4 23856.58 30795.78 2216 6009 21640.58 24786.78 182.9161 252.4364 0.8645246 1.156644 -0.2100211 0.2099452
5 23697.33 23752.31 2149 5892 21548.33 17860.31 686.138 220.6317 1.194685 0.836997 0.2566298 -0.2567056
6 31508.55 29518.13 2126 5848 29382.55 23670.13 886.744 293.7724 1.229185 0.813504 0.2977026 -0.2977785
7 33059.2 43307.9 2100.5 5872 30958.73 37435.9 296.5187 375.926 0.8188869 1.221106 -0.2882638 0.2881879
8 21649.48 24869.2 2106.5 5878.5 19542.98 18990.7 498.785 207.7326 1.01901 0.981293 0.02716824 -0.02724413
9 20266.43 34184.2 2101.5 5912 18164.93 28272.22 377.84 291.9969 0.6362126 1.571719 -0.6524191 0.6523432
10 25601.78 26602.46 2094 5844 23507.78 20758.46 445.045 226.7134 1.12136 0.8917271 0.1652499 -0.1653258
11 23916.98 23324.55 2069 5783 21847.98 17541.55 569.489 346.532 1.233309 0.8107843 0.302534 -0.3026098
12 26307.48 29808.98 2019 5766 24288.48 24042.98 644.515 355.734 1.000324 0.9996237 0.000467089 -0.000542979
13 31856.1 29993.41 1989.5 5783 29866.59 24210.41 563.17 201.4041 1.221552 0.8185876 0.2887154 -0.2887913
14 24899.49 31023.93 2083 5903 22816.49 25120.93 112.2836 85.7874 0.8993766 1.111823 -0.1530027 0.1529268
15 28128.78 28785.54 2036 5788 26092.78 22997.54 806.152 335.549 1.123486 0.8900402 0.1679817 -0.1680576
16 21450.44 23872.28 2024 5773 19426.44 18099.28 502.272 603.25 1.062821 0.9408423 0.08789925 -0.08797514
17 24575.82 33159.9 2008 5786 22567.82 27373.91 528.848 328.439 0.8163592 1.224886 -0.292724 0.2926481
18 36261.9 49018.9 1994 5715.5 34267.9 43303.4 1730.792 606.339 0.7836007 1.276093 -0.3518093 0.3517334
19 21516.15 23610.78 1959 5737 19557.15 17873.78 737.731 274.6833 1.083472 0.9229102 0.1156619 -0.1157378
20 24321.33 27921.11 1935 5780.5 22386.33 22140.61 875.432 233.7372 1.001202 0.9987466 0.001733457 -0.001809347

Total number of rows: 104544

Table truncated, full table size 10859 Kbytes.




Supplementary data files not provided
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap