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Sample GSM63697 Query DataSets for GSM63697
Status Public on Feb 21, 2006
Title H2009
Sample type genomic
 
Channel 1
Source name H2009 Adenocarcinoma Cell Line
Organism Homo sapiens
Characteristics ATCC catalogue number CRL-5911
Extracted molecule genomic DNA
Label Cyanine 5
 
Channel 2
Source name Male genomic
Organism Homo sapiens
Characteristics NOVAGEN POOLED MALE REFERENCE GENOMIC DNA
Extracted molecule genomic DNA
Label Cyanine 3
 
 
Description Cyanine 5 = sample
Cyanine 3 = reference
Data processing N/A
 
Submission date Jul 11, 2005
Last update date Feb 21, 2006
Contact name William Wallace Lockwood
E-mail(s) william.lockwood@nih.gov
Organization name National Human Genome Research Institute
Street address 50 South Drive
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL2043
Series (1)
GSE2922 High resolution analysis of non-small cell lung cancer cell lines by whole genome tiling path array CGH

Data table header descriptions
ID_REF
Spot Mean Intensity (w595) Mean Spot Pixel Intensity - Cy3 channel
Spot Mean Intensity (w685) Mean Spot Pixel Intensity - Cy5 channel
Background Median Intensity (w595) Median Background Pixel Intensity - Cy3 channel
Background Median Intensity (w685) Median Background Pixel Intensity - Cy5 channel
Spot Normalized Intensity (w595) Spot Mean - Background Median
Spot Normalized Intensity (w685) Spot Mean - Background Median
Spot SNR (w595) Signal to noise ratio - Cy3
Spot SNR (w685) Signal to noise ratio - Cy5 Signal to noise ratio - Cy5
Spot Ratio (w595) Cy3/Cy5
Spot Ratio (w685) Cy5/Cy3
Spot Log2 Ratio (w595) log2(Cy3/Cy5) (global mean set to "0")
VALUE log2(Cy5/Cy3) (global mean set to "0")

Data table
ID_REF Spot Mean Intensity (w595) Spot Mean Intensity (w685) Background Median Intensity (w595) Background Median Intensity (w685) Spot Normalized Intensity (w595) Spot Normalized Intensity (w685) Spot SNR (w595) Spot SNR (w685) Spot Ratio (w595) Spot Ratio (w685) Spot Log2 Ratio (w595) VALUE
1 23927.1 12618.29 1221 2575 22706.1 10043.29 234.6509 111.4247 0.9970238 1.00298 -0.004300218 0.004292875
2 21405.42 10751.93 1349 2664.5 20056.42 8087.43 232.7011 86.6459 1.09366 0.9143566 0.1291638 -0.1291711
3 31555.68 16348.38 1350 2643 30205.68 13705.38 481.856 213.088 0.971934 1.028871 -0.04106973 0.04106238
4 27388.74 14579.83 1372 2644 26016.74 11935.83 865.118 293.5621 0.9612572 1.040299 -0.05700551 0.05699816
5 22227.77 11007.29 1386.5 2632.5 20841.27 8374.79 470.906 167.9211 1.097462 0.9111887 0.1341709 -0.1341783
6 30851.3 29563 1416 2658 29435.3 26905 448.954 480.677 0.4824748 2.072636 -1.051474 1.051467
7 35205.8 17380.57 1459.5 2689.5 33746.3 14691.07 781.685 347.852 1.013007 0.9871551 0.01864387 -0.01865122
8 22435.74 26720.23 1501 2784 20934.74 23936.23 349.746 431.268 0.3857012 2.592667 -1.374444 1.374437
9 23606.66 11829.42 1459.5 2784.5 22147.16 9044.92 461.202 219.4407 1.079823 0.9260734 0.1107942 -0.1108015
10 27444.7 15085.4 1533 2846 25911.7 12239.4 483.975 228.6881 0.9336303 1.071082 -0.09907661 0.09906927
11 26090.55 13425 1512.5 2853 24578.05 10572 446.641 204.2563 1.025249 0.9753678 0.03597452 -0.03598186
12 28634.42 14758.4 1497 2819 27137.42 11939.4 488.286 183.6976 1.002364 0.9976368 0.003406067 -0.00341341
13 34853.9 16521.59 1432 2735 33421.9 13786.59 417.025 162.7635 1.069089 0.9353707 0.0963824 -0.09638974
14 24222.41 15344.71 1608 2785 22614.41 12559.71 311.5665 177.3287 0.7940443 1.259369 -0.3327086 0.3327012
15 28506.04 19147.44 1643 2816 26863.04 16331.44 440.493 188.4539 0.725387 1.378567 -0.4631772 0.4631698
16 17302.76 9824.87 1718 2854 15584.76 6970.87 155.7104 57.8928 0.9859442 1.014251 -0.02042208 0.02041474
17 25675.32 12817.84 1542 2785.5 24133.32 10032.34 287.873 112.9548 1.06085 0.9426359 0.08522012 -0.08522746
18 41852.2 19715.68 1582 2879 40270.2 16836.68 627.94 365.941 1.054792 0.9480494 0.07695844 -0.07696578
19 21080.48 8913.92 1561.5 2870.5 19518.98 6043.42 280.5605 124.9985 1.42434 0.7020758 0.510294 -0.5103014
20 30299.41 15674.99 1511 2836 28788.41 12838.99 534.824 293.055 0.98884 1.011281 -0.01619087 0.01618352

Total number of rows: 104544

Table truncated, full table size 11038 Kbytes.




Supplementary data files not provided
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