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Sample GSM64 Query DataSets for GSM64
Status Public on Nov 09, 2001
Title 22T-IME
Sample type RNA
 
Channel 1
Source name 4 day old shoot
Organism Zea mays
Extracted molecule total RNA
 
Channel 2
Source name Immature ear (2.5 cm)
Organism Zea mays
Extracted molecule total RNA
 
 
Description One of duplicate hybridizations.
 
Submission date Jun 12, 2001
Last update date May 27, 2005
Contact name Yangrae Cho
E-mail(s) yacho@sequence.stanford.edu
Phone 650-812-1976
Fax 650-812-1975
Organization name Stanford University
Department Biological Sciences
Lab V. Walbot
Street address 385 Serra Mall
City Stanford University
State/province CA
ZIP/Postal code 94305-8221
Country USA
 
Platform ID GPL12
Series (1)
GSE141 Gene-expression profile comparisons distinguish seven organs of maize

Data table header descriptions
ID_REF
Dia. Feature size
F635 Median Arithmetic median from channel 1
F635 Mean Arithmetic mean calculated as the raw signal divided by the surface area
F635 SD Standard deviation calculated from the mean signal (Channel 1)
B635 Median Arithmetic median of background from channel 1
B635 Mean Arithmetic mean of background (channel 1)
B635 SD Background standard deviation calculated for the mean background signal (channel 1)
F532 Median Arithmetic median from channel 2
F532 Mean Arithmetic mean calculated as the raw signal divided by the surface area (channel 2)
F532 SD Standard deviation calculated from the mean signal (Channel 2)
B532 Median Arithmetic median of background from channel 2
B532 Mean Arithmetic mean of background (channel 2)
B532 SD Background standard deviation calculated for the mean background signal (channel 2)
Rgn Rē Regression root square
F Pixels Area for intensity measurement of a feature
B Pixels Area for background intensity measurement
Flags crude quality:(-)value=bad flagged
VALUE log ratio of PRE_VALUE
PRE_VALUE The calculated ratio between (mean intensity of channel 1-median background)/(mean intensity of ch 2-median background of ch2)

Data table
ID_REF Dia. F635 Median F635 Mean F635 SD B635 Median B635 Mean B635 SD F532 Median F532 Mean F532 SD B532 Median B532 Mean B532 SD Rgn Rē F Pixels B Pixels Flags VALUE PRE_VALUE
707001A02.x1 130 16109 15809 5236 111 116 32 13729 13063 4352 105 110 30 0.95 120 793 0 0.0831443 1.211
707002E03.y1 120 9593 9750 2360 108 115 48 7461 7676 1827 105 111 32 0.958 120 636 0 0.1051693 1.274
707002G11.y1 120 1525 1670 1092 105 112 31 1669 1759 938 104 110 31 0.917 120 637 0 -0.0241093 0.946
707003H06.x3 120 8507 8596 2320 109 118 48 6167 6118 1396 105 115 68 0.955 120 665 0 0.1495273 1.411
707004B03.y1 120 1653 1788 1103 111 120 45 2916 3024 1218 107 121 57 0.849 120 665 0 -0.2403323 0.575
707004G10.x1 130 15130 15306 4213 111 116 35 18988 18876 5288 109 118 40 0.95 120 740 0 -0.0915153 0.810
707001A04.x1 130 6623 6618 1988 109 114 49 14879 14429 4595 108 115 34 0.92 120 740 0 -0.3419893 0.455
707002E04.y1 120 18707 18151 5048 110 117 46 17727 16853 5740 108 116 36 0.965 120 665 0 0.0322163 1.077
707003C01.x3 130 21491 22023 7038 107 111 27 8399 8643 2831 105 110 36 0.949 120 711 0 0.4094263 2.567
707003H07.x2 130 3445 3642 1701 103 114 104 4663 4755 1546 102 110 59 0.899 120 741 0 -0.1186153 0.761
707004H03.x2 130 16174 15547 4540 100 111 104 20387 19665 5922 100 107 55 0.96 120 740 0 -0.1023733 0.790
707004A11.x2 120 13375 13245 4219 96 99 21 9123 9065 3388 98 101 19 0.953 120 636 0 0.1661343 1.466
707001C09.x1 140 2354 2406 1212 94 102 107 2720 2620 1007 97 100 22 0.892 156 830 0 -0.0381053 0.916
707002B05.y1 120 3675 3695 1148 90 100 120 4609 4506 830 96 100 27 0.93 120 649 0 -0.0877783 0.817
707003C02.x2 120 5044 5266 1965 89 93 23 20530 19713 7052 98 101 32 0.885 120 664 0 -0.5783963 0.264
707003H08.x4 120 2460 2446 1020 87 92 29 4118 3947 1121 95 98 19 0.88 120 664 0 -0.2132493 0.612
707004G04.x2 130 5327 5242 1452 87 91 27 6927 6578 1809 95 98 19 0.942 120 738 0 -0.0996333 0.795
707004D11.y1 120 4711 4474 1103 88 102 175 4053 3913 931 97 118 359 0.951 120 682 0 0.0603203 1.149
707001E11.x1 130 11371 11299 3702 92 96 23 16945 16817 5814 97 102 25 0.957 120 742 0 -0.1739253 0.670
707002F05.y1 130 11557 11463 3117 91 100 104 11355 11116 3130 96 101 38 0.954 120 828 0 0.0136803 1.032

Total number of rows: 5760

Table truncated, full table size 548 Kbytes.




Supplementary data files not provided
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