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Sample GSM641894 Query DataSets for GSM641894
Status Public on May 08, 2013
Title CTC_lymphocyteTCD8_HTLV_HAM
Sample type SAGE
Anchor NlaIII
Tag Count 60620
Tag Length 10
Source name Peripheral Blood CD8+ T Lymphocytes isolated from HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP) infected individuals
Organism Homo sapiens
Characteristics organ/tissue: peripheral blood
tissue preparation: immunomagnetic separation
cell type: CD8+ T Lymphocytes
other information: Pooled samples from HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP) infected individuals
Biomaterial provider Clinical Hospital of Faculty of Medicine of Ribeirão Preto (University of São Paulo) and Regional Blood Center of Ribeirão Preto
Extracted molecule total RNA
Extraction protocol TRIzol® Reagent
Description Peripheral blood CD8 T cells were isolated using anti-CD8 Ab-coated microbeads by passing the PBMC through a magnetic cell separation system (MACS; Miltenyi Biotec) with column type LS. CD8+ T cells were isolated to >80% purity by MACS. A pool of 4 individual samples were used.
Data processing N/A
Submission date Dec 17, 2010
Last update date May 08, 2013
Contact name Daniel Guariz Pinheiro
Phone +55-16-2101-9300
Organization name Faculdade de Medicina de Ribeirão Preto (Universidade de São Paulo)
Department Departamento de Genética
Lab Laboratório de Genética Molecular e Bioinformática
Street address Rua Tenente Catão Roxo, 2501
City Ribeirão Preto
State/province São Paulo
ZIP/Postal code 14051-140
Country Brazil
Platform ID GPL4
Series (1)
GSE26150 Gene expression profiles of CD8+ T Lymphocytes isolated from HTLV-1 infected individuals

Data table header descriptions
TPM tags per million

Data table
CACAAACGGT 777 12817.55
TTGGTCCTCT 621 10244.14
TGTGTTGAGA 618 10194.66
GGATTTGGCC 580 9567.80
GTTGTGGTTA 580 9567.80
GAGGGAGTTT 494 8149.13
ATAATTCTTT 387 6384.03
CCAGAACAGA 378 6235.57
TGGTGTTGAG 361 5955.13
GGGCTGGGGT 351 5790.17
TGCACGTTTT 342 5641.70
GCCGAGGAAG 330 5443.75
TTGGTGAAGG 316 5212.80
AGGGCTTCCA 310 5113.82
GCAGCCATCC 302 4981.85
GCATAATAGG 297 4899.37
CTGACCTGTG 293 4833.39
ATGGCTGGTA 291 4800.40
CTGGGTTAAT 289 4767.40
AGGCTACGGA 275 4536.46

Total number of rows: 20784

Table truncated, full table size 387 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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