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| Status |
Public on Feb 26, 2024 |
| Title |
Plasma,Control,1 |
| Sample type |
SRA |
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| Source name |
Plasma
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| Organism |
Homo sapiens |
| Characteristics |
tissue: Plasma
Sex: Female
age: 65
disease state: Control
subject: Control,1
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| Extracted molecule |
total RNA |
| Extraction protocol |
RNAs were isolated using the tRNA/YRNA Depletion Protocol.
Libraries were prepared for sequencing with the automated Gel-Free option in the NEXTFLEX® Small RNA-Seq Kit v3.
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| Library strategy |
miRNA-Seq |
| Library source |
transcriptomic |
| Library selection |
size fractionation |
| Instrument model |
Illumina NovaSeq 6000 |
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| Description |
Memories_AZM06780_Plasma_S82_R1_001.fastq
miR.Counts_plasma.csv
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| Data processing |
We used cutadapt (version 1.8.1) to trim adapters and random bases
Data were processed with miRge2 with the latest release of miRbase
Supplementary files format and content: For miR.Counts_serum.csv, each row represents one miRNA, each column represents one serum sample.
Supplementary files format and content: For miR.Counts_plasma.csv, each row represents one miRNA, each column represents one plasma sample.
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| Submission date |
Oct 14, 2022 |
| Last update date |
Feb 26, 2024 |
| Contact name |
Qingfeng Wen |
| E-mail(s) |
q.wen@maastrichtuniversity.nl
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| Phone |
0620144388
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| Organization name |
Maastricht University
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| Department |
Department of Toxicogenomics
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| Street address |
Universiteitssingel 40
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| City |
Maastricht |
| State/province |
Limburg |
| ZIP/Postal code |
6229ER |
| Country |
Netherlands |
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| Platform ID |
GPL24676 |
| Series (1) |
| GSE215789 |
Circulating microRNAs associated to cerebrospinal fluid amyloid-β and phosphorylated tau levels as potential non-invasive biomarkers for mild cognitive impairment and Alzheimer’s disease |
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| Relations |
| BioSample |
SAMN31284087 |
| SRA |
SRX17890719 |
| Supplementary data files not provided |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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