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Status |
Public on Feb 26, 2024 |
Title |
Plasma,AD,22 |
Sample type |
SRA |
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Source name |
Plasma
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Organism |
Homo sapiens |
Characteristics |
tissue: Plasma Sex: Female age: 84 disease state: AD subject: AD,22
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Extracted molecule |
total RNA |
Extraction protocol |
RNAs were isolated using the tRNA/YRNA Depletion Protocol. Libraries were prepared for sequencing with the automated Gel-Free option in the NEXTFLEX® Small RNA-Seq Kit v3.
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Library strategy |
miRNA-Seq |
Library source |
transcriptomic |
Library selection |
size fractionation |
Instrument model |
Illumina NovaSeq 6000 |
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Description |
Memories_HB04458_Plasma_S80_R1_001.fastq miR.Counts_plasma.csv
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Data processing |
We used cutadapt (version 1.8.1) to trim adapters and random bases Data were processed with miRge2 with the latest release of miRbase Supplementary files format and content: For miR.Counts_serum.csv, each row represents one miRNA, each column represents one serum sample. Supplementary files format and content: For miR.Counts_plasma.csv, each row represents one miRNA, each column represents one plasma sample.
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Submission date |
Oct 14, 2022 |
Last update date |
Feb 26, 2024 |
Contact name |
Qingfeng Wen |
E-mail(s) |
q.wen@maastrichtuniversity.nl
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Phone |
0620144388
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Organization name |
Maastricht University
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Department |
Department of Toxicogenomics
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Street address |
Universiteitssingel 40
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City |
Maastricht |
State/province |
Limburg |
ZIP/Postal code |
6229ER |
Country |
Netherlands |
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Platform ID |
GPL24676 |
Series (1) |
GSE215789 |
Circulating microRNAs associated to cerebrospinal fluid amyloid-β and phosphorylated tau levels as potential non-invasive biomarkers for mild cognitive impairment and Alzheimer’s disease |
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Relations |
BioSample |
SAMN31284063 |
SRA |
SRX17890671 |
Supplementary data files not provided |
SRA Run Selector |
Raw data are available in SRA |
Processed data are available on Series record |
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