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Sample GSM67 Query DataSets for GSM67
Status Public on Nov 10, 2001
Title 27B-8DLB
Sample type RNA
 
Channel 1
Source name 4 day old shoot
Organism Zea mays
Extracted molecule total RNA
 
Channel 2
Source name 8 day old leaf blade
Organism Zea mays
Extracted molecule total RNA
 
 
Description One of duplicate hybridizations.
 
Submission date Jun 13, 2001
Last update date May 27, 2005
Contact name Yangrae Cho
E-mail(s) yacho@sequence.stanford.edu
Phone 650-812-1976
Fax 650-812-1975
Organization name Stanford University
Department Biological Sciences
Lab V. Walbot
Street address 385 Serra Mall
City Stanford University
State/province CA
ZIP/Postal code 94305-8221
Country USA
 
Platform ID GPL12
Series (1)
GSE141 Gene-expression profile comparisons distinguish seven organs of maize

Data table header descriptions
ID_REF
Dia. Feature size
F635 Median Arithmetic median from channel 1
F635 Mean Arithmetic mean calculated as the raw signal divided by the surface area
F635 SD Standard deviation calculated from the mean signal (Channel 1)
B635 Median Arithmetic median of background from channel 1
B635 Mean Arithmetic mean of background (channel 1)
B635 SD Background standard deviation calculated for the mean background signal (channel 1)
F532 Median Arithmetic median from channel 2
F532 Mean Arithmetic mean calculated as the raw signal divided by the surface area (channel 2)
F532 SD Standard deviation calculated from the mean signal (Channel 2)
B532 Median Arithmetic median of background from channel 2
B532 Mean Arithmetic mean of background (channel 2)
B532 SD Background standard deviation calculated for the mean background signal (channel 2)
Rgn Rē Regression root square
F Pixels Area for intensity measurement of a feature
B Pixels Area for background intensity measurement
Flags crude quality:(-)value=bad flagged
VALUE log ratio of PRE_VALUE
PRE_VALUE The calculated ratio between (mean intensity of channel 1-median background)/(mean intensity of ch 2-median background of ch2)

Data table
ID_REF Dia. F635 Median F635 Mean F635 SD B635 Median B635 Mean B635 SD F532 Median F532 Mean F532 SD B532 Median B532 Mean B532 SD Rgn Rē F Pixels B Pixels Flags VALUE PRE_VALUE
707001A02.x1 140 2947 3206 1458 69 71 15 2418 2685 1206 63 65 15 0.922 156 918 0 0.0777313 1.196
707002E03.y1 130 3712 3669 983 69 71 19 2906 2847 761 63 65 16 0.94 120 693 0 0.1115993 1.293
707002G11.y1 130 662 693 250 68 70 17 697 824 435 62 64 14 0.786 120 709 0 -0.0861863 0.820
707003H06.x3 140 2562 2591 1219 67 69 16 2816 2965 1270 62 63 14 0.927 156 824 0 -0.0609803 0.869
707004B03.y1 140 826 966 472 68 69 14 398 508 349 62 65 17 0.6 156 804 0 0.3038443 2.013
707004G10.x1 140 3990 4160 1714 68 70 15 5497 6033 2390 62 64 17 0.94 156 810 0 -0.1643093 0.685
707001A04.x1 130 5250 5490 2005 70 80 93 3549 3896 1294 62 65 20 0.937 120 691 0 0.1504493 1.414
707002E04.y1 120 5625 5483 1779 70 80 96 6493 6256 1870 62 65 20 0.951 120 650 0 -0.0584893 0.874
707003C01.x3 140 2648 2886 1172 68 69 15 7929 8841 4284 60 62 13 0.912 156 822 0 -0.4934953 0.321
707003H07.x2 140 843 888 339 67 69 14 785 844 335 60 62 17 0.86 156 768 0 0.0199473 1.047
707004H03.x2 140 11270 11334 5710 68 70 14 10054 10302 4409 60 62 16 0.926 156 797 0 0.0413933 1.100
707004A11.x2 140 3863 3861 1714 69 70 15 3256 3410 1598 60 62 13 0.934 156 804 0 0.0538463 1.132
707001C09.x1 140 671 681 249 68 70 20 818 844 405 60 63 24 0.854 156 794 0 -0.1067933 0.782
707002B05.y1 130 2170 2240 554 67 73 47 2894 2898 647 61 63 24 0.939 120 689 0 -0.1157713 0.766
707003C02.x2 140 9324 9677 3668 67 72 43 2901 3059 1099 60 62 21 0.904 156 804 0 0.5056933 3.204
707003H08.x4 140 883 948 383 67 68 14 625 711 481 59 61 14 0.711 156 776 0 0.1306553 1.351
707004G04.x2 140 3012 3176 1052 67 69 19 3738 3650 1259 60 62 18 0.938 156 811 0 -0.0624823 0.866
707004D11.y1 130 2415 2437 554 68 69 15 2948 2848 630 60 63 34 0.941 120 709 0 -0.0705813 0.850
707001E11.x1 130 5042 5294 1804 69 119 449 6032 6266 1900 61 85 260 0.939 120 731 0 -0.0746883 0.842
707002F05.y1 130 4191 4549 1389 68 114 426 3754 3992 1034 60 81 247 0.937 120 812 0 0.0569053 1.140

Total number of rows: 5760

Table truncated, full table size 536 Kbytes.




Supplementary data files not provided
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