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Sample GSM6796963 Query DataSets for GSM6796963
Status Public on Dec 07, 2022
Title Plaque-ISO-0.5hrs-rep1
Sample type protein
 
Source name plaque, ISO, 0.5hrs
Organism Mus musculus
Characteristics age: 22 weeks
gender: male
strain: C57BL/6J
tissue: vessel
Treatment protocol Mice were subcutaneous injected with a single dose of isoproterenol (ISO, 5 mg/kg body weight) or vehicle saline (10 ml/kg body weight). Hearts and vessels were harvested and immediately frozen in liquid nitrogen.
Extracted molecule protein
Extraction protocol Weigh out tissue and cut into cubes. Prepare protein extraction reagent containing inhibitors. Add ice-cold Protein Extraction Reagent containing protease inhibitors. Grind in a blender on low power using 30-second bursts until fully homogenized. Allow material to cool for 1 minute between bursts. Centrifuge the lysate at 14,000xg for 15 minutes and transfer the supernatant to a new tube for further analysis.
Label PE-Streptavidin
Label protocol Samples were labeled according to the manufacturer’s instructions
 
Hybridization protocol Cytokine arrays were used according to the manufacturer’s instructions. All sample measurements were performed in duplicate. The array plate were washed, incubated with a biotin-conjugated beads for half an hour, washed again, and developed for half an hour with PE-conjugated streptavidin.
Scan protocol Driven by the flowing sheath fluid, the microspheres pass through the red and green laser successively in a single row. The red laser is used to determine the fluorescence code of the microspheres, and the green laser is used to measure the fluorescence intensity of the molecules reported by the Luminex X-200.
Description PI0.5-1
Data processing By comparing the signal intensities, relative expression levels of cytokines can be made. The intensities of signals can be quantified by densitometry.
 
Submission date Dec 06, 2022
Last update date Dec 07, 2022
Contact name Xianda Chen
E-mail(s) chenxd@bjmu.edu.cn
Organization name Peking University Third Hospital
Department Institute of Vascular Medicine
Street address No. 49, Huayuan Bei Road, Haidian District
City Beijing
ZIP/Postal code 100191
Country China
 
Platform ID GPL32918
Series (1)
GSE220225 Cytokines in the ApoE-/- mice atherosclerotic plaque

Data table header descriptions
ID_REF
VALUE Luminex X-200 computed normalized signal indensity.

Data table
ID_REF VALUE
CCL20 0.938355009
IL-1B 1.475571007
CXCL5 0.884346265
TNF 1.41776619
CSF2 1.404294463
CX3CL 1.05631358
CCL1 0.82083593
CXCL13 1.1579107
IL-16 1.059655855
IFNG 1.057593091
CXCL10 0.875987
IL-2 0.475683998
CXCL11 1.020874714
IL-6 1.812800498
IL-4 1.050378427
CCL7 8.574660059
CCL12 2.329963336
CCL2 3.031858334
CCL22 1.492149415
CCL5 1.195918382

Total number of rows: 31

Table truncated, full table size <1 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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