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Sample GSM6796972 Query DataSets for GSM6796972
Status Public on Dec 07, 2022
Title Plaque-ISO-24hrs-rep1
Sample type protein
 
Source name plaque, ISO, 24hrs
Organism Mus musculus
Characteristics age: 22 weeks
gender: male
strain: C57BL/6J
tissue: vessel
Treatment protocol Mice were subcutaneous injected with a single dose of isoproterenol (ISO, 5 mg/kg body weight) or vehicle saline (10 ml/kg body weight). Hearts and vessels were harvested and immediately frozen in liquid nitrogen.
Extracted molecule protein
Extraction protocol Weigh out tissue and cut into cubes. Prepare protein extraction reagent containing inhibitors. Add ice-cold Protein Extraction Reagent containing protease inhibitors. Grind in a blender on low power using 30-second bursts until fully homogenized. Allow material to cool for 1 minute between bursts. Centrifuge the lysate at 14,000xg for 15 minutes and transfer the supernatant to a new tube for further analysis.
Label PE-Streptavidin
Label protocol Samples were labeled according to the manufacturer’s instructions
 
Hybridization protocol Cytokine arrays were used according to the manufacturer’s instructions. All sample measurements were performed in duplicate. The array plate were washed, incubated with a biotin-conjugated beads for half an hour, washed again, and developed for half an hour with PE-conjugated streptavidin.
Scan protocol Driven by the flowing sheath fluid, the microspheres pass through the red and green laser successively in a single row. The red laser is used to determine the fluorescence code of the microspheres, and the green laser is used to measure the fluorescence intensity of the molecules reported by the Luminex X-200.
Description PI24-1
Data processing By comparing the signal intensities, relative expression levels of cytokines can be made. The intensities of signals can be quantified by densitometry.
 
Submission date Dec 06, 2022
Last update date Dec 07, 2022
Contact name Xianda Chen
E-mail(s) chenxd@bjmu.edu.cn
Organization name Peking University Third Hospital
Department Institute of Vascular Medicine
Street address No. 49, Huayuan Bei Road, Haidian District
City Beijing
ZIP/Postal code 100191
Country China
 
Platform ID GPL32918
Series (1)
GSE220225 Cytokines in the ApoE-/- mice atherosclerotic plaque

Data table header descriptions
ID_REF
VALUE Luminex X-200 computed normalized signal indensity.

Data table
ID_REF VALUE
CCL20 0.304534401
IL-1B 0.298034186
CXCL5 0.222666286
TNF 0.463817835
CSF2 0.399860221
CX3CL 0.307271662
CCL1 0.228831459
CXCL13 0.679516314
IL-16 0.275749889
IFNG 0.293675489
CXCL10 0.211298609
IL-2 0.126750851
CXCL11 0.249561859
IL-6 0.212732478
IL-4 0.352253897
CCL7 0.549080155
CCL12 0.216574642
CCL2 0.358476025
CCL22 0.240709821
CCL5 0.289225217

Total number of rows: 31

Table truncated, full table size <1 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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