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Sample GSM68 Query DataSets for GSM68
Status Public on Nov 10, 2001
Title 27T-4DR
Sample type RNA
 
Channel 1
Source name 4 day old shoot
Organism Zea mays
Extracted molecule total RNA
 
Channel 2
Source name 4 day old root
Organism Zea mays
Extracted molecule total RNA
 
 
Description One of duplicate hybridizations.
 
Submission date Jun 13, 2001
Last update date May 27, 2005
Contact name Yangrae Cho
E-mail(s) yacho@sequence.stanford.edu
Phone 650-812-1976
Fax 650-812-1975
Organization name Stanford University
Department Biological Sciences
Lab V. Walbot
Street address 385 Serra Mall
City Stanford University
State/province CA
ZIP/Postal code 94305-8221
Country USA
 
Platform ID GPL12
Series (1)
GSE141 Gene-expression profile comparisons distinguish seven organs of maize

Data table header descriptions
ID_REF
Dia. Feature size
F635 Median Arithmetic median from channel 1
F635 Mean Arithmetic mean calculated as the raw signal divided by the surface area
F635 SD Standard deviation calculated from the mean signal (Channel 1)
B635 Median Arithmetic median of background from channel 1
B635 Mean Arithmetic mean of background (channel 1)
B635 SD Background standard deviation calculated for the mean background signal (channel 1)
F532 Median Arithmetic median from channel 2
F532 Mean Arithmetic mean calculated as the raw signal divided by the surface area (channel 2)
F532 SD Standard deviation calculated from the mean signal (Channel 2)
B532 Median Arithmetic median of background from channel 2
B532 Mean Arithmetic mean of background (channel 2)
B532 SD Background standard deviation calculated for the mean background signal (channel 2)
Rgn Rē Regression root square
F Pixels Area for intensity measurement of a feature
B Pixels Area for background intensity measurement
Flags crude quality:(-)value=bad flagged
VALUE log ratio of PRE_VALUE
PRE_VALUE The calculated ratio between (mean intensity of channel 1-median background)/(mean intensity of ch 2-median background of ch2)

Data table
ID_REF Dia. F635 Median F635 Mean F635 SD B635 Median B635 Mean B635 SD F532 Median F532 Mean F532 SD B532 Median B532 Mean B532 SD Rgn Rē F Pixels B Pixels Flags VALUE PRE_VALUE
707001A02.x1 140 6554 6596 3006 104 105 17 7535 7874 3668 123 126 26 0.922 156 892 0 -0.0767563 0.838
707002E03.y1 120 7704 7627 2164 106 107 15 6339 6271 1971 124 127 23 0.938 120 620 0 0.0877813 1.224
707002G11.y1 120 1323 1287 393 107 108 16 1215 1186 350 124 127 23 0.94 120 637 0 0.0457143 1.111
707003H06.x3 130 4268 4433 1490 107 115 104 4423 4620 1540 126 130 44 0.939 120 741 0 -0.0163743 0.963
707004B03.y1 130 1243 1379 541 106 114 107 1516 1680 670 126 130 46 0.931 120 707 0 -0.0867163 0.819
707004G10.x1 130 12550 12854 4226 108 110 32 13421 14126 4508 125 128 26 0.946 120 741 0 -0.0409593 0.910
707001A04.x1 130 4136 4412 1615 106 111 37 9819 10514 4104 125 131 35 0.94 120 722 0 -0.3830003 0.414
707002E04.y1 120 12062 11528 3358 106 110 26 11738 11053 2988 124 129 43 0.964 120 637 0 0.0191163 1.045
707003C01.x3 130 13292 13732 4730 107 119 181 8898 8939 2843 123 129 45 0.938 120 725 0 0.1889283 1.545
707003H07.x2 130 2777 3039 1231 108 123 188 2372 2606 974 122 128 44 0.95 120 724 0 0.0718823 1.180
707004H03.x2 140 13283 13401 5355 106 110 53 13153 13306 5240 119 123 28 0.95 156 827 0 0.0034613 1.008
707004A11.x2 130 5487 6023 2481 107 120 205 5946 6410 2437 121 127 70 0.946 120 692 0 -0.0264103 0.941
707001C09.x1 140 1806 1994 843 108 122 187 1709 1862 726 122 130 73 0.942 156 843 0 0.0350293 1.084
707002B05.y1 130 2590 2645 787 107 118 65 3867 3835 1006 125 132 54 0.941 120 708 0 -0.1649443 0.684
707003C02.x2 130 2999 3175 1088 105 118 102 10139 10363 4175 125 142 144 0.935 120 739 0 -0.5228793 0.300
707003H08.x4 130 1615 1664 546 103 110 85 2054 2208 912 120 132 137 0.937 120 740 0 -0.1260983 0.748
707004G04.x2 130 4522 4620 1518 102 107 29 5491 5455 1716 119 122 24 0.963 120 717 0 -0.0721173 0.847
707004D11.y1 130 3054 3098 845 103 108 32 3976 4008 1183 122 126 28 0.958 120 729 0 -0.1129463 0.771
707001E11.x1 140 13021 13043 5159 104 106 22 12207 12665 5555 123 128 30 0.958 156 828 0 0.0136803 1.032
707002F05.y1 130 6894 6855 2098 104 110 42 9247 9456 3151 121 126 29 0.956 120 781 0 -0.1408623 0.723

Total number of rows: 5760

Table truncated, full table size 552 Kbytes.




Supplementary data files not provided
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